<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27937

Description Uncharacterized protein
SequenceMATSQVYLKRFYTRTAIRQTNPYLVMATALYLACKMEECPQHIRLLTQEARSLWPSDLHGHDAARVGECEFSLISEMHSQLIVHQPYRPLLALQDEFGLTQDEMSLAWTIINDHYMTDLPLLHPPHIIALTAVLLALVLRPSSTSAGGGGGGGGGGSGSSSGGAGGGSNNNASSSAPAAAAAAAAAAGAGGVAMAASALAQAQAQVQAQAQAQAKAGAMAAGGGGGGGGGGGGGGSQSSQQQQQQQQQQQQHQQTCFSQGSSQQGAGEGTVAEPKKATDPRLAKVQRFAAWLADSNIDIEAMVDCTQELISFYECHEQYNDKHTREQISRFIKARNLDK
Length339
PositionKinase
OrganismMyceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) (Sporotrichum thermophile)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Chaetomiaceae> Thermothelomyces.
Aromaticity0.05
Grand average of hydropathy-0.315
Instability index67.82
Isoelectric point6.11
Molecular weight35361.99
Publications
PubMed=21964414

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27937
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.05|      46|      74|     147|     195|       1
---------------------------------------------------------------------------
  147-  192 (81.89/19.83)	GGGGGGGGGGSGSSSGGAGGGSNNNASSSAPAAAAAAAAAAGAGGV
  196-  223 (29.02/ 8.99)	.............ASALA....QAQAQVQAQAQAQAKAGAMAAGG.
  226-  271 (84.14/20.57)	GGGGGGGGGGSQSSQQQQQQQQQQQQHQQTCFSQGSSQQGAGEGTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.24|      17|      37|      71|      87|       3
---------------------------------------------------------------------------
   71-   87 (30.68/22.17)	FSLISEMHSQ..LIVHQPY
   97-  115 (25.56/17.38)	FGLTQDEMSLawTIINDHY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27937 with CycC domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQAQAKAGAMAAGGGGGGGGGGGGGGSQSSQQQQQQQQQQQQHQQTCFSQGSSQQGAGEGTVAEPKKATDP
2) SAGGGGGGGGGGSGSSSGGAGGGSNNNASSSAPAAA
210
145
280
180










Molecular Recognition Features






MoRF SequenceStartStop




1) AAAAAA
180
185