<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27921

Description Uncharacterized protein
SequenceMGKSRRNRARGNRSDPIAKPVKPPTDPELAKLRESKILPVLKDLKSPDIKSRTAAAGAIANIVQDAKCRKLLLREQVVHVVLTETLTDNSIDSRAAGWEILKVLAEEEEADFCVHLYRIDVLTAIEHAAKAIIETLTATDPAFSKLLKAQQRLVWSITSSLLTLLNLLALAREEIHDAIVQNQTILRLLFRLAATDVAPQDIFEEALSCLATVSEDSLQLGQAMTNDQETQCYDVLLKLATGTGPRAVLACGVLHNVFSSLQWLDHSPGKDGACDAVLVPSLARALEQVNPSGAQTNGSSSHVEITQLALEILASIGTDFQDTLVKGNKAPLDAAKADEEWNGFEDADADAMDVDQGSDAGLGEDEDEAEESEDEEQDGDDDSIDSEMEADMNRVVGEEGSGAADLSDLPTLRELIQRAVPQLIRLSNITVGSEEALAIQSRALSALNNIAWTISCLEFADGENAHIFNAWSPTAKKIWRKTIAPILEADNADLKLATQITSLAWAVARTLNGETPADGGQHRKFISLYHASKNQAKQQQQQQQQQQQQQQQQQQQQPGARQEDAGEAQEDPFQGLGVKCIGVLGSLARDPAPIEVNREVGVFLMTILSSSETAPPADVVEALNQLFDLYGDEEAPCDAEVFWKDGFLKHLEEFVPKMRALAKGVDKRTQAELRTRADEALLNLGRFVQYKKKHAPK
Length697
PositionTail
OrganismMyceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) (Sporotrichum thermophile)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Chaetomiaceae> Thermothelomyces.
Aromaticity0.04
Grand average of hydropathy-0.336
Instability index48.08
Isoelectric point4.71
Molecular weight76107.61
Publications
PubMed=21964414

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27921
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.81|      15|      22|     364|     385|       2
---------------------------------------------------------------------------
  345-  359 (25.37/ 7.72)	EDAD..ADAMDVDQGSD
  364-  380 (22.44/23.30)	EDEDeaEESEDEEQDGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.86|      18|      22|     571|     591|       3
---------------------------------------------------------------------------
  574-  591 (31.27/28.72)	QGLGVKCIGVLGSLARDP
  598-  615 (29.60/15.64)	REVGVFLMTILSSSETAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27921 with Med15 domain of Kingdom Fungi
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