<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27914

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDAVLKKSLEAIESSLASLLESVTVDDPSSDAALALVAADDDLSSSLEQLVVHQTNHQKLLHLRALSSALDSELSTLLTTLSQARIELQSTTTTVFPAHARQVEYDALLSYATKISKFTRPPTHLKSQPQPADPTASTEASSSTALVLKSADVNGNNATKDGGVDGSSANNAAGAGAGETTGNAATRPTAEDIAMLDPTAGMPFVPWPTEEIMRRGILANMGSMETMPDAAAGQEAEPGAAEPDTTGEVAPPTGGSRQMSDADRERAREEAARREAERKQKEQEVFQGLDLYDPDSD
Length297
PositionMiddle
OrganismArthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Orbiliomycetes> Orbiliales> Orbiliaceae> Orbilia> Arthrobotrys oligospora.
Aromaticity0.03
Grand average of hydropathy-0.461
Instability index47.88
Isoelectric point4.49
Molecular weight31245.02
Publications
PubMed=21909256

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP27914
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.15|      23|      24|      16|      38|       1
---------------------------------------------------------------------------
    2-   30 (25.67/13.30)	DAVLkkSLEAiessLASLLESVTVDDPSS
   31-   57 (31.47/17.59)	DAAL..ALVAadddLSSSLEQLVVHQTNH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.32|      11|      24|     155|     165|       2
---------------------------------------------------------------------------
  155-  165 (20.38/12.29)	GNNATKDGGVD
  182-  192 (19.94/11.87)	GNAATRPTAED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.91|      25|     128|     121|     145|       3
---------------------------------------------------------------------------
   62-   84 (21.05/ 7.73)	...HLRALSSALDSELSTLLTTlSQA
   96-  119 (32.43/15.27)	FPAHARQVEYDALLSYATKISK.FT.
  121-  145 (42.44/21.90)	PPTHLKSQPQPADPTASTEASS.STA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27914 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TRPPTHLKSQPQPADPTASTEASSSTALVLKSADVNGNNATKDGGVDGSSANNAAGAGAGETTGNAATRPTAEDIAMLDPTAGMPFVPWPTEEIMRRGILANMGSMETMPDAAAGQEAEPGAAEPDTTGEVAPPTGGSRQMSDADRERAREEAARREAERKQKEQEVFQGLDLYDPDSD
119
297










Molecular Recognition Features






MoRF SequenceStartStop




1) RQMSDADRERAREEAARREAERKQKEQEVFQGLDLYDPDSD
257
297