<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27912
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MASTITPTSAETWCKFLRRSLSMRVDIEQFETYARSILRKAPIPRDDLAAVLISPTAYPTPQLSVDPRYLLYIQRLVSANIVPLSSFLHALWSSDRVQQNHVLHGGEGDMAAALSREAVDTAILTSLVLVVQSLQGGGGGGGGNAAPRETPAALIDSLSKWMDAVIAANDGDGLNALDGHGLDGLGLSSGIMGPQKKAIIGELVIAVGENQTLNGFLKTSHEISKDKRANFENTLPMFVQGFQALNPELAMRLDALIPKKADGPGSAGAGNALLGMGIGLDAIGEAGQPSRGGLYVFINSLLFARPLVDDEYLIHHLLNRYKEIGGQVALDLIIAALDCIANAISRSESESTIALFRHFLVNKIPLLLQRFNMPVIQAQYVVTQALAKSGSNPLSLDPSLDTMLDLSNDIKQEFLFACALHQIIEESSVEVILGDVPLQTMAKRRYTQGELVAECMSDGDRVERLISEIEELDGNSGAIVGAVVEMLRIMCEQRATMGLYTLCKNLISRPKTIDLLLLYSSPATILEPLCIVLENWRYDDDQGEYEPVYKEFGYILLLILTIYYRHDLCFSSLGPSITSTSFVPMFIKQCWKDISVEDLGRMGDRHAQLGGWIKALYEGEGMTDEVMQSCRPQEYYSLVPTLMAQTVEAYERGVLDMRVLKEGLDYFQLPSLIASEVAIIFWLTDYIWQTMSSQGDISNALRILHTLVTNAPSEVTQTHKTILAICSHSLERVLKDVLRSEGTANNPSSAIHQQAEQILKHVSSSRDWRRTGLPSTSELEGWTKHSGGILGALKSAVQGVVMWSSTPDLALQPAGWNPRLLYAAWRLLGAKEVVRVLVDEVVSVGTDVGDVAVDLVASLIVAPVVEDWRWKVGEVTGRKEHTSVGNGGVLTLVEALRYLEDDCKLLGGEEQGRSEVVMKLARKVEGMMVASAVGGVGGAAVVGGVVDLADGVLGDVMVDGDMLMMPDAGVDLGLTADEIMTGM |
Length | 983 |
Position | Tail |
Organism | Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Orbiliomycetes>
Orbiliales> Orbiliaceae> Orbilia> Arthrobotrys oligospora.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.103 |
Instability index | 38.04 |
Isoelectric point | 4.90 |
Molecular weight | 106676.38 |
Publications | PubMed=21909256
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP27912
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 264.55| 90| 101| 755| 854| 1
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755- 854 (138.11/105.35) AEQILKHVSssRDWR.RTGlpstsELEGWTKHS....GGILgALKSAVQgvVMWSSTPDLALQPAGWNPRLLYAAWRLLG...AKEVVRV....LVDEVVSVGTDV.GDVAVD
857- 959 (126.43/73.22) ASLIVAPVV..EDWRwKVG.....EVTGRKEHTsvgnGGVL.TLVEALR..YLEDDCKLLGGEEQGRSEVVMKLARKVEGmmvASAVGGVggaaVVGGVVDLADGVlGDVMVD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 279.12| 72| 101| 152| 223| 2
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79- 146 (72.77/41.87) ...............ANIVPLSSFLHAlwssdrvqqnhVLHGG.EGDMAAALSREAVDT.................AI...LTSLVLV...VQSLQG.GGGGGGGNAA
152- 223 (121.27/75.26) A..............ALIDSLSKWMDA...........VIAAN.DGDGLNALDGHGLDGLGLSSGIMG....PQKKAI...IGELVIA...VGENQTLNGFLKTSHEI
229- 324 (85.09/50.35) AnfentlpmfvqgfqALNPELAMRLDA...........LIPKKaDGPG.SAGAGNALLGMGIGLDAIGeagqPSRGGLyvfINSLLFArplVDDEYLIHHLLNRYKEI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.14| 17| 46| 438| 455| 4
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438- 455 (26.44/24.35) LQTMAKRRYTQGeLVAEC
487- 503 (32.70/24.58) LRIMCEQRATMG.LYTLC
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