<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27908

Description Uncharacterized protein
SequenceMAANFWTSTQRAHWQLTREKIADMRRGLDEEDTNKGLGLAFPLPDHKQLQLYFHHYSENSTGLQRLARRLQLRQQPQATAETYLKRFYLKVSIRDTNPYLMLSTCVYLACKMEECPQHIRSVVNEARTLFQEFIPQDIAKLAECEFHLISELNSYLIVHHPYRTLMEVQVPLKLSPDEIMAAWSFLNDSYITDLILLYPPHTIAFTAIFLAVFVRPAIHTQANLNASGSTALGMGTAAGAGGSIVQPSVGQSAAVSAASGINPQNHSSARLSQMSEWFAESGVEMEAIIECTQEMISLYDAWETWTDKVCRESVARLIRGRQLS
Length324
PositionKinase
OrganismArthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Orbiliomycetes> Orbiliales> Orbiliaceae> Orbilia> Arthrobotrys oligospora.
Aromaticity0.09
Grand average of hydropathy-0.166
Instability index48.12
Isoelectric point6.13
Molecular weight36568.34
Publications
PubMed=21909256

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:EnsemblFungi
RNA polymerase II core promoter sequence-specific DNA binding	GO:0000979	IEA:EnsemblFungi

GO - Biological Process
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
positive regulation of transcription by galactose	GO:0000411	IEA:EnsemblFungi
positive regulation of transcription from RNA polymerase II promoter involved in meiotic cell cycle	GO:0010673	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27908
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.80|      15|      18|     243|     259|       1
---------------------------------------------------------------------------
  245-  259 (24.03/16.47)	VQPSVGQSAAVSAAS
  261-  275 (26.77/12.08)	INPQNHSSARLSQMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.20|      18|      18|      48|      65|       2
---------------------------------------------------------------------------
   48-   65 (32.74/22.21)	QLQLYFHHYSENSTGLQR
   69-   86 (30.46/20.21)	RLQLRQQPQATAETYLKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.99|      16|     290|       6|      27|       4
---------------------------------------------------------------------------
    6-   27 (23.74/27.06)	WTStqrahwQLTREKIADMRRG
  305-  320 (30.25/17.22)	WTD......KVCRESVARLIRG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27908 with CycC domain of Kingdom Fungi
Unable to open file!