<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27906

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMPAAIEINGHGSHDANPSNTGIVNGNGKGRENLSAMGTPQRMDGSPMTDEDPSSALVNLSLDEAPPLPHITYGFQSLGTIIDRTVQSSYGKLLELADSLQEGNDVARRKRLMKYVSDTRQQFIKVLVLAQWAGKNADVSKVIDLKVWMDEQRVNYEKVVWEVVEAQRAMVHAKIPNPDLATAVRTLSTGDPPRTSAREYYVPPKPLTSREILKTFQNINTLLHIRFNLHDIPPAYFNQYEINSGRVTFTSPDEFELDMSIADEDHASQLYFIDLRLVFKPALKILPMDRLRGELEARGNEILKNKGLVGIYDFLHDFVMTHKIAILRRQFLEMLQGKWSDTLYINMIKRTLVVQYWLGKPGAKNWIEIGIRKGNPDQGRSSSLSLRWMRDAKEASITGITFDVGNLSAESLLKSVIAKHTAYILKSIYKHLNRLPNFSADHLDLQLTSDTSGLSKLTVQLTPSRNLTVIIEPITGRFALQRPSHMVIRGENGMNQLADAANKAHETISKIRFMTMQEEIELRAKSMGWEILKMLNPRIADLKKFFGSATMYIMYMRKKSWSDNWILAVSLGVTGDFWWIVEINEAIRGGWTINDAQRLPISGNQQVTYQFLENLERMVASFITLYTNTRKLSAERIDYRLIPTNNTGAAIMIPTLNINFKALTKSDWGANNLRMSLHDLDRKGNITVLVEGRMKTPMTRLHSADLSAAKSDVAFHPRSGTFIMQFVVSVGSIVTDAITERLHRIERLIGFITTVQKYKLTAKTVTLGKIGFIYNKKPELSAEVTFDGEHEMELVFDTPTMNPHRRISSFLRTLLNQRGLTAVVGTLCLTLPLLAALDMIEDKSPEDEVFVLARSSEWYRIEYLKKNFVIDIKLRTRRDSVWWFIHDPMLRSQLQETNHHDAVQRLRHIWMLSGASFEGLKNGLVADKDAVGKILWKIHTTIMSPDPPEGSEMAAMDG
Length957
PositionTail
OrganismArthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Orbiliomycetes> Orbiliales> Orbiliaceae> Orbilia> Arthrobotrys oligospora.
Aromaticity0.08
Grand average of hydropathy-0.250
Instability index33.09
Isoelectric point9.08
Molecular weight108449.71
Publications
PubMed=21909256

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU365082
GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP27906
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     591.56|     207|     221|     251|     471|       1
---------------------------------------------------------------------------
  108-  168 (26.38/ 7.07)	.........................................................................................RKRLMKYV....SDT.RQQFIK.VLVLAQWAGKnADVSKVIDLKVWM...DEQRVNYEKVVWeVVEAQRA..............................................................................................................
  251-  471 (315.70/247.04)	P..DEFELD....MSIADEDHASQLyfIDLRLVFKPAL.KILPMdRLRGELEAR....GNEILK..NKGLVGIYDFLHDFVMthKIAILRRQFLEMLqgKWSDTlYINMIKrTLVVQYWLGK.PGAKNWIEIGIRKGNPDQGRSSSLSLRW.MRDAKEASITGITF.DVGNLSAES.......LLKSVIAKHTAYIlkSIYKHLNRLpnfSADHLDLQ......................LTSDTSGLSKLTVQLTP.SR..NLTVIIE
  472-  690 (249.48/158.65)	PitGRFALQrpshMVIRGENGMNQL..ADAANKAHETIsKIRFM.TMQEEIELRaksmGWEILKmlNPRIADLKKFFGSATM..YIMYMRKK.......SWSD........................NWI.LAVSLGVTGD.......FWW.IVEINEAIRGGWTInDAQRLPISGnqqvtyqFLENLERMVASFI..TLYTNTRKL...SAERIDYRliptnntgaaimiptlninfkaLTKSDWGANNLRMSLHDlDRkgNITVLVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.48|      52|     162|     735|     787|       2
---------------------------------------------------------------------------
  735-  787 (83.58/44.07)	DAItERLHRIERLIGFITTVQKYKLTAKTVTLGKI......GFIYNKKPELSAEVTFDG
  900-  957 (85.90/41.99)	DAV.QRLRHIWMLSGASFEGLKNGLVADKDAVGKIlwkihtTIMSPDPPEGSEMAAMDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27906 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPAAIEINGHGSHDANPSNTGIVNGNGKGRENLSAMGTPQRMDGSPMTDEDPSSALVNLS
1
60










Molecular Recognition Features






MoRF SequenceStartStop




NANANA