<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27898
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPGMLMDTGLGDLFEDNASTIRGIQEYIDRLRQGGCRQSIAWGKLGCIASVAANGTDVEIRHLQASTKDGSWSLSSKHTIKNVHGGSQLASVHWNNIGSEIAITDIYGRLAIWTVYVSLDRLNLLRQSQVTARDDLSMLAGLWWLNMNKPYALSKAAIKTDGVFKYPTNSLPPMGPLNPIQGRAACLGVTRHGVVKMWYSSDAQHIQKATAELESYTSMDDLITHAAYAPDRDRTAVLAVYTQSKQLRLYRISIDWKHPALPPNTNVSQLPLPVTIIVKRLKIEHYPGDGQDSATSFLTHLEVLSPFPGNNMQYHVVLGFFANTSQQQPVTTIKRWELRNIGTSLHPGFDQLAQRRNSTVTEKERHELISYPDVPLHKCALSVTQINASTMIGVTFTDGSFEIRDRMQFNTVHPTANNDKLLNMVHAGWHFPLLGPHVDIVLSPNYAAVALLTKEHDVNLVLMTHNDALEGTPEENPNILIAAATLAQQHACSSNNHSNNDDLAAVARQYNNDHFKTCVLLEAHRSLNQAIDFLQEQSNEKLQRNPFFQRCLSLQSVLYYKGWANPKPIPAKIAQATLHLKATSVGFGYFMNNVARHRQDVEDSKSNALQNLLGVVKWEIDFHVYLVDELLELARRVRSNPGDMELVKKIMHETNSCALPLILTGASRFLLKYNSRALRGFDQAARDHLAQNTVDEALKQGFQSLRTIMDANPVKFNMFEKLLVDIIAHIKRITETWDAQRRIDVDRMIFLTGEIPEVFYPIVEKFLQHSLGILKNDIDPSQIFFFDTTWLGFHDDRKSVVFKRTEKVDTLRKCLLKKGTPVRRCLRCGEVVEDLIPSARMGLWLQNVSRVCVCGCLWMHGD |
Length | 862 |
Position | Tail |
Organism | Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) (Nematode-trapping fungus) (Didymozoophaga oligospora) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Orbiliomycetes>
Orbiliales> Orbiliaceae> Orbilia> Arthrobotrys oligospora.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.243 |
Instability index | 42.14 |
Isoelectric point | 8.25 |
Molecular weight | 97118.05 |
Publications | PubMed=21909256
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP27898
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 178.40| 59| 331| 47| 114| 1
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47- 114 (98.71/73.79) CIASVAangtdveirHLQAST......KDGSWSLSSKHTIKNVHGGSQ....LASVH..WN..NIGS..EIAITDIYGRLAIWT
379- 453 (79.69/45.65) CALSVT.........QINASTmigvtfTDGSFEIRDRMQFNTVHPTANndklLNMVHagWHfpLLGPhvDIVLSPNYAAVALLT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 137.63| 32| 331| 331| 362| 2
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331- 362 (55.65/36.00) TTIKRWELRNIGTSLHPGFDQLAQRR..NSTVTE
617- 643 (36.84/21.41) ....KWEI.DFHVYLVDELLELARRV..RSNPGD
664- 696 (45.14/27.85) TGASRFLLKYNSRALR.GFDQAARDHlaQNTVDE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 216.11| 57| 364| 178| 236| 3
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178- 236 (96.86/75.40) NPIQGRaaCLGVTRHGVVKMWYSSD..AQHIQKATAELESYTS......MDDLITHA.AYAPDRDRTA
487- 518 (35.78/20.03) ...........................AQ..QHACSS.NNHSN......NDDLAAVArQYNNDHFKTC
545- 608 (83.47/58.56) NPFFQR..CLSLQSVLYYKGWANPKpiPAKIAQATLHLKA.TSvgfgyfMNNVARHR.QDVEDSKSNA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.56| 23| 698| 125| 149| 4
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125- 149 (38.98/29.97) LRQSQVTarDDL..SMLAGLWWLNMNK
826- 850 (37.59/22.50) LRCGEVV..EDLipSARMGLWLQNVSR
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