<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27877

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDILDMFCDRLSCHGKAEECVGLCRALLSALHWLLRCTAASAERLQEGLEAGTGPGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLQSQAEQCGTLIRSIPTMLSVHSEQLHKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYCHGDKDFTEDVHSAFEFLLKLTPLLDKADQRCNCDCTNFLLTECSKQGLLSEASVNSLTAKRTEDREQAPQLKSGENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNELNEFTTHGNGESTKAASVRALLFDISFLMLCHVAQTYGSEVILSESSPGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLYSENTLQFYNERVVIMNSILEHMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDMFAKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYSSLFPLDDTQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRQVAAKAIAAL
Length991
PositionTail
OrganismOryctolagus cuniculus (Rabbit)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Lagomorpha> Leporidae> Oryctolagus.
Aromaticity0.07
Grand average of hydropathy-0.004
Instability index46.66
Isoelectric point6.17
Molecular weight110264.75
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27877
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.51|      17|     246|     539|     559|       1
---------------------------------------------------------------------------
  539-  559 (27.09/26.17)	GKILnpdhPCFRPDSTKVESL
  787-  803 (33.42/19.48)	GHIL....PGLLTDSSKWHSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.24|      12|      26|      93|     105|       2
---------------------------------------------------------------------------
   93-  105 (19.85/17.02)	CvQALLDILD..MFC
  121-  134 (18.39/ 9.91)	C.RALLSALHwlLRC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     311.91|      67|     194|     196|     262|       3
---------------------------------------------------------------------------
  196-  262 (113.22/61.69)	LKLGEILANL.SNPQLQSQA.EQC.GTLIRSIPTMLSVHSEQLHKTGFPTVH...AVVLLE....GTMN.LTG......ETQPL
  266-  335 (65.76/33.03)	LMMVKRMQHI.PTPLFVLEIwKACfVGLIES.PE....GTEELKWTAFTFLKipqVLVKLKkychGDKD.FTE......DVHS.
  338-  392 (52.12/24.80)	....EFLLKL.T.PLLDKAD.QRC.NCDCTNF..LLTECSKQ....GL..........LSE....ASVNsLTAkrtedrEQAP.
  394-  449 (80.81/42.12)	LKSGEN.ANIqPNPGLILRA.EP...TVTNILKTMDADHSKS..PEGLLGVL.............GHM..LSG......KSLDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27877 with Med24 domain of Kingdom Metazoa
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