<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27845

Description Uncharacterized protein
SequenceMTAAPASPQQIRDRLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFAGSLDGSGHAGPEGGRLERGENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDLPGLTRESTCWPGVNGCQDTQGNWYDWTRCISLDPHGDDGRLNILPYVCLD
Length590
PositionUnknown
OrganismNomascus leucogenys (Northern white-cheeked gibbon) (Hylobates leucogenys)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hylobatidae> Nomascus.
Aromaticity0.04
Grand average of hydropathy-0.851
Instability index65.35
Isoelectric point9.52
Molecular weight64229.45
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27845
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     445.64|      96|      98|      86|     183|       1
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   86-  181 (172.59/55.99)	PAHQHEAALRGLAGA.TGSANGGAHNCRPEVGAAG......PPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRD........LGHPGPP.P...KVSKASHDPLVPNSSPLP
  185-  266 (89.96/28.85)	....ISGSPESFAGSlDGSGHAGPEGGRLERGENDkhsgkiPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVD.........ETPGPPhP...K.................
  268-  317 (67.75/18.51)	.........................................PPRC..SFSPRN..SRHEGSFARQQSLYAPKG...S........VPSPSPR.P...QALDATQ...VP..SPLP
  341-  437 (115.34/34.71)	WLEQPESHQR.LAGP.GCKA..GLSPAEPLLSRAG.....fSPDS...SKADSDAASSGGS..D..SKKKKRYRPRDytvnldgqVAEAGVK.PvrlKERKLTFDPMTRQIKPL.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.77|      20|      22|     451|     472|       2
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  453-  472 (33.37/21.84)	QQSRTELDKQE...AKASLQSPF
  474-  496 (29.40/12.22)	QTNWKELSRNEiiqSYLSRQSSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27845 with Med26 domain of Kingdom Metazoa
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