<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27826

Description Uncharacterized protein (Fragment)
SequenceKTFLGDMFSRQPPGAPLPPPGLPGQASLLQDGPGAPRSSPSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPEQVIKEDVSELRNELQRKDALQKHLTKLRHWQQVLEDINGQHEKPADLPQGSLAHLEQASASIPAPMKQT
Length176
PositionHead
OrganismMyotis lucifugus (Little brown bat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae> Myotis.
Aromaticity0.05
Grand average of hydropathy-0.601
Instability index64.33
Isoelectric point5.22
Molecular weight19553.83
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27826
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.03|      11|      17|      10|      20|       1
---------------------------------------------------------------------------
   10-   20 (24.46/11.73)	RQPPGAPLPPP
   30-   40 (22.57/10.36)	QDGPGAPRSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.37|      10|      22|      45|      54|       2
---------------------------------------------------------------------------
   45-   54 (16.85/10.84)	DELESSFEAC
   70-   79 (17.52/11.49)	EEIRTGVDQC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.88|      15|      20|      99|     118|       3
---------------------------------------------------------------------------
   99-  118 (13.61/21.92)	LQlsvQKpeQVIKEDVSELR
  121-  135 (24.26/14.74)	LQ...RK..DALQKHLTKLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27826 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MFSRQPPGAPLPPPGLPGQASLLQDGPGAPRSSPSTL
2) NGQHEKPADLPQGSLAHLEQASASIPAPMKQT
7
145
43
176










Molecular Recognition Features






MoRF SequenceStartStop




1) KTFLGDMF
1
8