<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27816

Description Uncharacterized protein
SequenceSVTPGQGLPPIAQPGPPSMVGTVSQGEESGPSPAPLGVLVLSEQQPISKKSLAWSGVLEWKEKFKPGTNIPLMRSLPCQVYVDHGENLKTDLWPQKLIMNLFPSQLLIPLGHYIRNSRRVQFSFTNLDLESHKSLYRMIGNGCGGFVHFLFMDHSKLRIYMLLLSRKKKTFMGLIPYDQKGFLNRMGQIVRRELKKGEQALPGLSPLLEDQASSSQNLLLLRQPQSEPQGTVEAAAASGQPQPSVLPRFPPGTAQGPPRTAPSLPLLHLSFGPRTLGPTVASPPQPTPDPVRPPFVRVQPPPPPPXSRLPHCSHRGPCIVDTTHRAWGCPLGPPLLQLPLTQPRPAQLPPGAPLPGHMLLSFG
Length363
PositionUnknown
OrganismMyotis lucifugus (Little brown bat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae> Myotis.
Aromaticity0.06
Grand average of hydropathy-0.294
Instability index54.06
Isoelectric point9.94
Molecular weight39435.49
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27816
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.42|      19|      23|     249|     271|       3
---------------------------------------------------------------------------
  250-  271 (27.69/14.46)	PPGTAQGPPrTAPsLP..LLhLSF
  342-  362 (33.74/ 6.29)	QPRPAQLPP.GAP.LPghML.LSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.50|      20|      24|      62|      85|       4
---------------------------------------------------------------------------
   50-   71 (28.88/17.57)	KSLAWSGVLEWKEKFKpgTNI.P
   74-   94 (31.62/18.81)	RSLPCQVYVDHGENLK..TDLwP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.55|      11|      24|     120|     135|       5
---------------------------------------------------------------------------
  120-  135 (10.65/26.25)	VQFSFtnLDlesHKSL
  147-  157 (21.90/17.95)	VHFLF..MD...HSKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27816 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PLGPPLLQLPLTQPRPAQLPPGAPLPGHMLLS
2) SQNLLLLRQPQSEPQGTVEAAAASGQPQPSVLPRFPPGTAQGPPRTAPSLPLLHLSFGPRTLGPTVASPPQPTPDPVRPPFVRVQPPPPPPXSRLPHCSHRGP
330
215
361
317










Molecular Recognition Features






MoRF SequenceStartStop




NANANA