<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27812

Description Transducin beta like 1 X-linked receptor 1
SequenceMPDVVQTRQQAYRDKLAQQQAAAAAAAAAATNQQGSAKNGENTANGEENGAHTIARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK
Length376
PositionTail
OrganismMyotis lucifugus (Little brown bat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae> Myotis.
Aromaticity0.08
Grand average of hydropathy-0.435
Instability index24.43
Isoelectric point6.34
Molecular weight40812.97
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27812
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     389.82|      40|      40|     184|     223|       1
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   66-   99 (39.00/18.81)	...SGSTQLVLRHCirEGGQDVP..S....NKDVTS.............LDWNSEG
  102-  140 (61.57/33.50)	L.ATGSYDGFARI...WTKDGNLASTLGQHKGPIFA.............LKWNKKG
  142-  179 (21.76/ 7.59)	F...........IL..SAGVDKTTIIWDAHTGE..AkqqfpfhsapaldVDWQ...
  184-  223 (71.07/39.69)	F.ASCSTDMCIHVC..KLGQDRPIKTFQGHTNEVNA.............IKWDPTG
  226-  265 (72.68/40.74)	L.ASCSDDMTLKIW..SMKQDNCVHDLQAHNKEIYT.............IKWSPTG
  277-  316 (61.94/33.75)	L.ASASFDSTVRLW..DVDRGICIHTLTKHQEPVYS.............VAFSPDG
  318-  357 (61.81/33.66)	YlASGSFDKCVHIW..NTQTGALVHSYRG.TGGIFE.............VCWNAAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27812 with Med16 domain of Kingdom Metazoa
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