<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27810

Description Uncharacterized protein
SequenceQDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAAAAASAAAAAAATVATAATTATVTPAAVSQPNAPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNESSNGASTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLSCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNANIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length472
PositionTail
OrganismMyotis lucifugus (Little brown bat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae> Myotis.
Aromaticity0.07
Grand average of hydropathy-0.260
Instability index33.23
Isoelectric point5.63
Molecular weight50371.56
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27810
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     394.86|      40|      40|     280|     319|       1
---------------------------------------------------------------------------
  117-  152 (34.15/17.18)	........PSKatVLRGHESEVFICAWNPVS.........dlL.A.SGS.GDSTAR
  171-  208 (47.01/26.49)	HCIREGGHDVP..S....NKDVTSLDWNSDG.........tlL.A.TGS.YDGFAR
  209-  249 (46.67/26.24)	I.WTEDGNLAS..TLGQHKGPIFALKWNKKG..........nY.IlSAG.VDKTTI
  250-  290 (53.40/31.11)	IWDAHTGEAKQ..QFPFHSAPALDVDWQNN..........ttF.A.SCS.TDMCIH
  291-  332 (60.62/36.33)	VCRLSCDRPVK..TFQGHTNEVNAIKWDPSG.........mlL.A.SCS.DDMTLK
  333-  383 (57.50/34.08)	IWSMKQDTCVH..DLQAHSKEIYTIKWSPTGpatsnpnanimL.A.SAS.FDSTVR
  387-  425 (49.54/28.32)	VERGVC...IH..TLTKHQEPVYSVAFSPDG..........kYlA.SGS.FDKCVH
  426-  467 (45.97/25.73)	IWNTQSGSLVH..SYRG.TGGIFEVCWNARG........dkvG.A.SASdGSVCV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.29|      16|      17|      41|      56|       2
---------------------------------------------------------------------------
   41-   56 (23.48/11.73)	ASAAAAAAAAAAASAA
   61-   76 (25.81/13.54)	ATVATAATTATVTPAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27810 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TATVTPAAVSQPNAPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPSKA
69
120










Molecular Recognition Features






MoRF SequenceStartStop




NANANA