<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27802

Description Uncharacterized protein
SequenceTRQSPSLPSQLCQELSFHPIKWQSRIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRNWQKLIEPVHQNEAVLRGLAGAPGSANGGAHNCRPEAGVASAPKSIHDLKNRNDIQRLPGLRLDRLGSHKRRGDQRDLGHLGPPPKVSKVSHDSLVPNSSPLPTNGIGGSPESFPGPLDSGRHVGPEGSCLEQGENDKHSIKIPINAVRPHTSSPGLGKPSGPCLQSKAAVLQQLDRADETSGPPHPKGPPRCSFSPRNSRHEGSFARQRSPYSPKGSVPSPLPRPQSLDVTQVPSPLPLAQPSTPPVRRLELLPSAESPVHWLEQPEGHQRLAGPVCKAGLSPAESILPRAGFSPDSSRADSDAASSGGSDSKKKRKQSRDYTVNLGGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHTEQPRTELDKPEAKTSLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRRGARTPHVLLPPGPSTDLPGLSRQVTQNDLDRIQAHQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length599
PositionUnknown
OrganismMyotis lucifugus (Little brown bat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae> Myotis.
Aromaticity0.04
Grand average of hydropathy-0.816
Instability index64.02
Isoelectric point9.49
Molecular weight65522.98
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27802
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.90|      18|      24|     485|     504|       1
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  485-  504 (26.60/22.87)	IQSYLSRQSSllSSSGAQTP
  510-  527 (32.30/20.97)	MSEYLKQEES..TRRGARTP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.69|      21|      24|     416|     436|       2
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  416-  436 (38.26/24.22)	K.PVRLKERKLTFDPMTRQIKP
  440-  461 (34.44/21.04)	KePVRADSPVHTEQPRTELDKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     291.00|      77|      90|     195|     284|       3
---------------------------------------------------------------------------
  110-  207 (76.82/24.05)	...........HN......CRP.EAGVASAPKsihdLK.........NRNDI.QRLPglRLDRL.GS.......HKRRGdqrdlghlgpPPKVSKVSHDSLVPNSsplptngiggspesfpGPLDS..............GRH.......VGPEG
  219-  296 (117.24/56.88)	SIKIPINavRPHT......SSP.GLGKPSGPC....LQ.........SKAAVLQQLD..RADETSGP.......PHPKG..........PPRCSFSPRNSRHEGS......................................farqrspYSPKG
  297-  414 (96.94/31.45)	SVPSPLP..RPQSldvtqvPSPlPLAQPSTPP....VRrlellpsaeSPVHWLEQPE..GHQRLAGPvckaglsPAESI..........LPRAGFSPDSSRADSD............aassGGSDSkkkrkqsrdytvnlGGQ.......VAEAG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27802 with Med26 domain of Kingdom Metazoa
Unable to open file!