<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27798

Description Prostate tumor overexpressed 1
SequenceVVRPRRPLFGGAAPALGTAHPVSPRAAYSRPSRSRSWPASPRGPQPPRIRARSAPPMQGARVFGALGPIGPSSPGLALGGLAVSEHRLSNKLLAWSGVLEWQEKRRPFSDSNAKLKRTLPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNAIRQVITTRKQAVGPGGVAGPVQIVNNKFLAWSGVMEWQEPRPEPNNRSKRWLPSHVYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFPYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG
Length415
PositionUnknown
OrganismMyotis lucifugus (Little brown bat)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae> Myotis.
Aromaticity0.08
Grand average of hydropathy-0.312
Instability index52.91
Isoelectric point10.46
Molecular weight46672.72
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
nucleoplasm	GO:0005654	IEA:Ensembl

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27798
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     611.58|     153|     158|      77|     233|       1
---------------------------------------------------------------------------
   77-  233 (297.06/170.66)	ALGGLAVSEHRLSNKLLAWSGVLEWQEKrRPfsDSNAKLKRTLPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTnRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNAIRQVI
  241-  393 (314.52/168.47)	GPGGVAGPVQIVNNKFLAWSGVMEWQEP.RP..EPNNRSKRWLPSHVYVNQGEILRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFT.KDLETLKSLCRIMDNGFAGCVHFPYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.40|      21|      47|       2|      24|       2
---------------------------------------------------------------------------
    2-   24 (36.47/20.98)	VRPR..RPLFGgaA...PALGTAHPVSP
   49-   74 (30.93/12.55)	IRARsaPPMQG..ArvfGALGPIGPSSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27798 with Med25 domain of Kingdom Metazoa
Unable to open file!