<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27797
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | AGGTMDLAYVCEWEKWPKSTHCPSVPLACAWSCRNLIAFTTDLRNDDQDLTRLIHILDTEHPWDVHSISSEHSEAITCLEWDQSGSRLLSADANGQIKCWSMADHLANSWESPMGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAIFFSSTAPRSMDEPAIKRPRTTGPTVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSMGHTLDVNLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVERLHEEYTRQKAALQQVLSTRILAMKASLCKLSPCTVTLVCDYHAKLFLIAISSTLKSLLRPHILNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGAPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDETLVDECCLLPSQLLIPSLDWLPVSDGLVSRLQPKQPLRLHFGKAPILPGSATTLQLDGLIRATGQPKIDHLRRLHLGAHPTEECKACTRCGCVTMLKSPNKTTAVKQWEQRWIKNCLCGGLWRRMPLSCP |
Length | 833 |
Position | Tail |
Organism | Myotis lucifugus (Little brown bat) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae>
Myotis.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.046 |
Instability index | 48.68 |
Isoelectric point | 7.92 |
Molecular weight | 92264.38 |
Publications | PubMed=21993624
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:Ensembl
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
thyroid hormone receptor binding GO:0046966 IEA:Ensembl
transcription coactivator activity GO:0003713 IEA:Ensembl
|
GO - Biological Process | positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261 IEA:Ensembl
|
Interaction
Repeat regions
Repeats |
>MDP27797
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 102.01| 27| 132| 14| 40| 1
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14- 40 (53.52/28.68) EKWPKSTHCPSVPLACAWSCRNLIAFT
149- 175 (48.49/25.34) EKFSRVKFSPSLTLFGGKPMEGWIAVT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 80.87| 17| 132| 218| 234| 2
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218- 234 (28.65/15.54) IVVATADGSSASPVQFY
333- 349 (25.05/12.81) ILSATNDLDRVSAVALP
353- 369 (27.17/14.42) ISLTNTDLKVASDTQFY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 161.98| 52| 200| 75| 128| 3
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75- 128 (90.85/59.52) AITCLEW...DQSGSRLL..SADANGQIKCWSM.ADHL.ANSWESPMGSLVeGD..PIVaLSW
271- 331 (71.13/39.14) AITHLKFlarDMSEQVLLcaSSQTSSIVECWSLrKEGLpVNNIFQQISPVV.GDkqPMI.LKW
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