<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27776
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | SEHLSCAFTFFLHGESNVCTSVEIAQHQPIYLINEEHIHMAQSSPAPFQVLVSPYGLNGTLTGQAYKMSDPATRKLIEEWQYFYPMVLKKKEELKEEELGYDNDFPVAVEVIVGGVRMVYPSAFVLISQNDIPVPQSVASAGGHISVGQQGLGSVKDPSNCGMPLTPPTSPEQAATGESGGAQSAVSHLGAQDGGMITMHSPKRSGKIPLKLHNHMVHRVWKECILNRTQSKRSQVSTPTLEEEPANNPATWDFVDPTQRVSCSCSRHKLLKRCAVGTNRPPTISQPGFNAGPSSSSSLPPPASSKHKTTERQEKGDKLQKRPLIPFHHRPSVAEELCMEQDTPGQKLGLAGIDSSLEVSSSRKYDKQMAVPSRNTSKQMNLNPMDSPHSPISPLPPTLSPQPRGQETESLDPPSVPVNPALYGNGLELQQLSTLDDRTVLVGQRLPLMAEVSETALYCGIRHSNPESSDKWWHSFCLPPIDDVEFRPPELQGERCDAKMEVNSESTALQRLLAQPNKRFKIWHDKQPQMQPLHFLDPLPLSQQPGDSLGEVNDPYTFEDGDIKYIFTANKKCKQGTEKDSLKKNKSEDGFGTKDVTTPGHSTPVPDGKNAMSIFSSATKTDVRQDNAAGRAGSSSLTQVTDLAPSLHDLDNIFDNSDDDELGAVSPALRSSKMPTVGTEDRPLGKDGRAAVHYAPTVADLQRMFPTPPSLEQHPAFSPVMSYKDGISSETVTALGMMESPMVSMVSTQLTEFKMEVEDGLGSPKPEEIKDFSYVHKVPTFQPFVGSSMFAPLKMLPSQCLLPLKIPDACLFRPSWAIPPKIEQLPMPPAATFVRDGYNNVPSVGSLADPDYLNTPQMNTPVTLNSTAPASNSGAGVLPSPATPRFSVPTPRTPRTPRTPRGGGTASGQGSVKYDSTDQGSPASTPSTTRPLNSVEPATMQPIPEAHSLYVTLILSDSVMNIFKDRNFDSCCICACNMNIKGADVGLYIPDSSNEDQYRCTCGFSAIMNRKLGYNSGLFLEDELDIFGKNSDIGQAAERRLMMCQTTFLPQMEAARKPQEPPISLLLLLQNQHTQPFASLSFLDYISSNNRQTLPCVSWSYDRVQADNNDYWTECFNALEQGRQYVDNPTGGKVDEALVRSATVHSWPHSNVLDISMLSSQDVVRMLLSLQPFLQDAIQKKRTGRTWENIQHVQGPLTWQQFHKMAGRGTYGSEESPEPLPIPTLLVGYDKDFLTISPFSLPFWERLLLDPYGGHRDVAYIVVCPENEALLEGAKTFFRDLSAVYEMCRLGQHKPICKVLRDGIMRVGKTVAQKLTDELVSEWFNQPWSSEENDNHSRLKLYAQVCRHHLAPYLATLQLDSSLLTPPKYQTPPAAAQGQATPGNTGPLAANAGSAAPSAGGAFNPTSNGSSANPAASSSTSGSTVPPVSSSASAPVVSQLGTTSSSGFSGSVGGQNPSTGASSADRTQGNIGCGGDPEPGQSSSQPSQDGQESVTERERIGIPTEPDSADSQAYPPAVVIYMVDPFTYTAEEDSTSGNFWLLSLMRCYTEMLDNLPEHMRNSFILQIVPCQSMLQTMKDEQVFYIQYLKSMAFSVYCQCRRPLPTQIHIKSLTGFGPAASIEMTLKNPERPSPIQLYSPPFILAPIKDKQTEAPNKDKQTELGEILGEASQKYNVLFVGYCLSHDQRWLLASCTDLHGELLETCIVNIALPNRSRKSKVSARKIGLQKLWEWCIGIVQMTSLPWRVVIGRLGRLGHGELKDWSILLGECSLQTISKRLKDMCRMCGISATDSPSILSACLVAMEPQGFVVMPDAVTMGSVFGRSTALNMQSSQLNTPQDASCTHILVFPTSSTIQVAPANYPNEDGFSPNNDMFDLPFPDDMDNDIGILMTGNLPSPNSSPVPSPGSPSGIGVGSHFQHSRSQGERLLSREAPEELKQQPLALGYFVSTAKAENLPQWFWSSCPQAQNQCPLFLKASLHHHISVAQTDELLPTRTSQWVPHPLDSKTTSDVLRFVLEQYNALSWLTCNPATQDRTSCLPVHFVVLTQLYNAIMNIL |
Length | 2056 |
Position | Middle |
Organism | Myotis lucifugus (Little brown bat) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia>
Eutheria> Laurasiatheria> Chiroptera> Microchiroptera> Vespertilionidae>
Myotis.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.396 |
Instability index | 59.57 |
Isoelectric point | 5.65 |
Molecular weight | 224909.73 |
Publications | PubMed=21993624
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP27776
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 1502.50| 558| 630| 245| 874| 1
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245- 504 (250.25/139.41) .............................................................................................................................................................................................................................................................................................................................................................................................................PanNPATWDFVDPTQRVscscSRHKLLKRCAVGTNRPPTISQPGFNAG.PSSSSSLPPPASSKHKTTERQ.EKGDKLQKRPLIP......FHHRPSVAEELCM.EQDTPGQKLGLAGIDSSLEvSSSRKYDKQMAVPSRNTSKQMNL...NPMD..SPHSPISPLPP..TLSPQPR..GQETESLDPPSVPVNPALYGNGLELQQLSTLddrtvlvgQRLPLMAEVSETALYC......GIRHSNpesSDkWWHSfCLPPIDDVEFRPPELQGERCDAKMeVNS
505- 1141 (856.39/481.73) ESTAL..QRLLAQPNKRFKIwhdkqpQMQPlhFLDPLPLSQQPG...DSLGEVNDPYTFEdgdiKYIFTANKkCKQGTEK..DSLKKNKSEDGFGtKD.VTTPGHSTPVPDgKNAMSIFSSATKTD...VRQDNAAGRAGSSSLtqvtdlapsLHDLDNIFDnsdddelgavspalrsskMPTVGtEDRPLGK...DG..RAAVHYAPTVAD..LQRMFPTPPSLEQHPAFSPVMSYKDGISSETVTALG..MMESPMVSMVSTQLTEFKMEVEDGLGSPKPEEIKDFSYVHKV.PTFQPFVGSSMFAPlkmLPSQCLLPLKIPDAclfrPSWAIPPKIEQLPMPPAATFVRD.GYNNvPSVG.SLADPDYLNTPQMNTPVTLNSTAPASNSGagvlP..SPATPRFSVPTPRT....PRTPRTPRGGGTASGQGSVKYDSTDQGsPASTPSTTRPLNSVEPATMQPiPEAHSLYVTLILSdsvmniFKDRNFDSCCICAcNMNIKGADVGLYIPDSSNE.DQYRCTCGFSAIMNRKLGYNSGLfleDELDifGKNSDIGQAAErrLMMCQTTflPQMEAARKPQEPPISLLLLLQNQHTQPFASL........SFLDYISSNNRQTLPCvswsydRVQADN...ND.YWTE.CFNALEQGRQYVDNPTGGKVDEAL.VRS
1149- 1490 (395.85/177.21) HSNVLdiSMLSSQDVVRMLL......SLQP..FLQDAIQKKRTGrtwENIQHVQGPLTWQ....QFHKMAGR.GTYGSEEspEPLPIPTLLVGYD.KDfLTISPFSLPFWE.RLLLDPYGGHRDVAyivVCPENEALLEGAKTF.........FRDLSAVYE..................MCRLG.QHKPICKvlrDGimRVGKTVAQKLTDelVSEWFNQPWSSEENDNHSRLKLYAQVCRHHLAPYLAtlQLDSSLLTPPKYQTPPAAAQGQATPGNTGPLAANAGSAAPSAgGAFNPTSNGSSANP...AASSSTSGSTVPPV....SSSASAPVVSQLGTTSSSGFSGSvGGQN.PSTGaSSADRTQGNIGCGGDPEPGQSSSQPSQDG................................................................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 563.45| 176| 279| 1510| 1697| 2
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1510- 1697 (286.03/199.65) DSQAYPPAVVIYMvDPFTYTAEEDS.TSGN.FWLLSLMRCYTEMLdNLPEHMRNSFILqIVPCQSMLqtmkdeQVFYIQYLKSMAFSVYC.QCRRPLPTQI..HIKSL.TGFGPAASiEMTLKNPERPSPIQLYSpPFILAPIKDKQ...TEAPNKDKQ..TELGEILGEA.SQKYNVLFVGYC.LSHDQRWLLASCTdLH
1791- 1979 (277.42/160.48) DSPSILSACLVAM.EPQGFVVMPDAvTMGSvFGRSTALNMQSSQL.NTPQDASCTHIL.VFPTSSTI......QVAPANYPNEDGFSPNNdMFDLPFPDDMdnDIGILmTGNLPSPN.SSPVPSPGSPSGIGVGS.HFQHSRSQGERllsREAPEELKQqpLALGYFVSTAkAENLPQWFWSSCpQAQNQCPLFLKAS.LH
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