<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27769

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAAATAATAGTTTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length524
PositionTail
OrganismMeleagris gallopavo (Wild turkey)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Galliformes> Phasianidae> Meleagridinae> Meleagris.
Aromaticity0.07
Grand average of hydropathy-0.294
Instability index35.87
Isoelectric point5.40
Molecular weight56656.44
Publications
PubMed=20838655

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27769
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     366.55|      40|      40|     332|     371|       1
---------------------------------------------------------------------------
  175-  208 (40.15/19.40)	..LRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTARIWNL.......
  234-  269 (39.56/19.01)	.S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFARI.WT.EDGNLA
  270-  300 (39.23/18.80)	STLGQHKGP...........IFALKWNKKG..........nY............ILSA.GVDKTT
  301-  352 (52.12/27.19)	IIWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIHVCRL.GCDRPV
  353-  394 (62.61/34.01)	KTFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLKIWSM.KQDTCV
  395-  443 (47.18/23.97)	HDLQAHSKE...........IYTIKWSPTGpgtsnpnsnimL.ASAS.FDSTV...RLwDVDRGV
  446-  487 (58.12/31.09)	HTLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVHIWNT.QSGTLV
  488-  519 (27.57/11.21)	HSYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.35|      22|      22|     128|     149|       4
---------------------------------------------------------------------------
  128-  149 (36.10/23.91)	AVSQQNTPKNGEATVNGEENGA
  151-  172 (38.25/25.76)	AINNHSKPMEIDGDVEIPPNKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27769 with Med16 domain of Kingdom Metazoa
Unable to open file!