<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27741

Description Uncharacterized protein
SequenceLRLSALFISSLTKPFAPPSLAAGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQQASAAAAAAAAGGEATVNGEENGAHAIKNNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCGRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length510
PositionTail
OrganismAiluropoda melanoleuca (Giant panda)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Caniformia> Ursidae> Ailuropoda.
Aromaticity0.07
Grand average of hydropathy-0.236
Instability index38.56
Isoelectric point5.75
Molecular weight54956.91
Publications
PubMed=20010809

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27741
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     409.84|      40|      40|     318|     357|       1
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  161-  192 (40.57/24.37)	..........LRGHESEVFICAWNPVS.........dlL.A.SGS.GDSTARIW
  212-  248 (50.02/31.97)	REG.GHDVPS....NKDVTSLDWNSDG.........tlL.A.TGS.YDGFARIW
  249-  289 (48.08/30.41)	T.EDGNLASTLGQHKGPIFALKWNKKG..........nY.IlSAG.VDKTTIIW
  290-  330 (52.96/34.34)	DAHTGEAKQQFPFHSAPALDVDWQNNT..........tF.A.SCS.TDMCIHVC
  331-  372 (63.68/42.95)	RLGCGRPVKTFQGHTNEVNAIKWDPSG.........mlL.A.SCS.DDMTLKIW
  373-  423 (56.36/37.07)	SMKQDTCVHDLQAHSKEIYTIKWSPTGpatsnpnsnimL.A.SAS.FDSTVRLW
  424-  465 (59.09/39.26)	DVERGVCIHTLTKHQEPVYSVAFSPDG..........kYlA.SGS.FDKCVHIW
  466-  505 (39.08/23.17)	NTQSGSLVHSYRG.TGGIFEVCWNARG........dkvG.A.SASdGSVCV...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27741 with Med16 domain of Kingdom Metazoa
Unable to open file!