<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27740

Description Uncharacterized protein
SequenceRLTEGGSRIVRTSSPRGEAKMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQQASAAAAAAAAGGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCGRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length526
PositionTail
OrganismAiluropoda melanoleuca (Giant panda)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Caniformia> Ursidae> Ailuropoda.
Aromaticity0.07
Grand average of hydropathy-0.303
Instability index39.27
Isoelectric point5.62
Molecular weight56961.91
Publications
PubMed=20010809

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27740
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     409.84|      40|      40|     334|     373|       1
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  177-  208 (40.57/20.10)	..........LRGHESEVFICAWNPVS.........dlL.A.SGS.GDSTARIW
  228-  264 (50.02/26.41)	REG.GHDVPS....NKDVTSLDWNSDG.........tlL.A.TGS.YDGFARIW
  265-  305 (48.08/25.11)	T.EDGNLASTLGQHKGPIFALKWNKKG..........nY.IlSAG.VDKTTIIW
  306-  346 (52.96/28.37)	DAHTGEAKQQFPFHSAPALDVDWQNNT..........tF.A.SCS.TDMCIHVC
  347-  388 (63.68/35.51)	RLGCGRPVKTFQGHTNEVNAIKWDPSG.........mlL.A.SCS.DDMTLKIW
  389-  439 (56.36/30.64)	SMKQDTCVHDLQAHSKEIYTIKWSPTGpatsnpnsnimL.A.SAS.FDSTVRLW
  440-  481 (59.09/32.45)	DVERGVCIHTLTKHQEPVYSVAFSPDG..........kYlA.SGS.FDKCVHIW
  482-  521 (39.08/19.11)	NTQSGSLVHSYRG.TGGIFEVCWNARG........dkvG.A.SASdGSVCV...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27740 with Med16 domain of Kingdom Metazoa
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