<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27726

Description Uncharacterized protein
SequenceSQIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPVHQNEAALRGLAASAGSANGGAHNCRPEAGAAGTPKSIHDLKNRNDIQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDSLVPNSSPLPTNGIGGSPESFPGALDGSGHTGPEGGRLEHGESDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQTKAAVLQQLDRVDETPGPPHSRGPPRCSFSPRNSRHEGSFARQRSPYTPKGSMPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPEGHQRGQGCKVGLPPAESLLPRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHTEQPRTELDKPEAKASVQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRRGARKPHVLVPHSAPTDLPGLNREVTQDDLDRIQAHQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length575
PositionUnknown
OrganismAiluropoda melanoleuca (Giant panda)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.904
Instability index55.78
Isoelectric point9.50
Molecular weight62725.58
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27726
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     395.94|      95|      99|     240|     337|       1
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  137-  232 (128.51/48.20)	P...GPP.....PKVSKasHD........SLVPNSSPLPTN.......GIGGSPESFPGALDGSGHT.GPeggrL.....EHGESDKHsgkiPVNAVR..PHTSSP..GLGKPPGPclQTKAAVLQQLD
  241-  337 (174.60/75.27)	PHSRGPPRCSFSPRNSR..HE.......GSFARQRSPYTPK.......GSMPSPSPRPQALDATQVP.SP....L.....PLAQPSTP....PVRRLEllPSAESPVRWLEQPEGH..QRGQGCKVGLP
  338-  433 (92.82/32.24)	PAESLLPRAGFSPDSSK..ADsdaassgGSDSKKKKRYRPRdytvnldGQVAEAGVKPVRLKERKLTfDP....MtrqikPLTQ..KE....PVR.......ADSPVH.TEQPRTE.............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.57|      15|      22|     464|     480|       2
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  464-  480 (21.68/20.55)	YLSRQSSllSSSGAQTP
  489-  503 (26.89/17.97)	YLKQEES..TRRGARKP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27726 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAALRGLAASAGSANGGAHNCRPEAGAAGTPKSIHDLKNRNDIQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDSLVPNSSPLPTNGIGGSPESFPGALDGSGHTGPEGGRLEHGESDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQTKAAVLQQLDRVDETPGPPHSRGPPRCSFSPRNSRHEGSFARQRSPYTPKGSMPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPEGHQRGQGCKVGLPPAESLLPRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHTEQPRTELDKPEAKASVQSPFEQTNW
2) QSSLLSSSGAQTPGAHHFMSEYLKQEESTRRGARKPHVLVPHSAPTDLPGLNREVTQDDLDRIQAHQWP
69
468
452
536










Molecular Recognition Features






MoRF SequenceStartStop




1) KKKKRYRPRDYTVNLDGQ
2) RRLELL
368
305
385
310