<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27697

Description Uncharacterized protein
SequenceMKVVNLKQAILHAWKERWSDYQWAINMKKFFPKGTTWDILNLAEALLEQAMTGLAPNPLILSYLKYAISSQMVSSSSVLMAISKFDDFSRNICVQALLGIMDMFCDRLSCHGKAEECIGLCRALVNILNWMLRCATFYTEKMKEPLEQGAAENQLKMCLDRLVKILSSTKNRALIHIAKLEETPSWNPVEQSLAKLTENLGHINNNQLRSQAEECISLVKSIPTMLSVHSEQLNKTGFPTVHAVVLLEGTMNLTGDPHPLVEQLMMVKRMQHIPSPLFILEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYPQGEKDFTDDVNCAFEFLLKLTPLLDKADQRCNCDCISLLLQECSKQGLLSEPNMNNLTDKRTADREHAPRLKSAENANIQPNPSLILRAEPTVTNILKTMDSDHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFTKHISGEGSKAASVRALLFDISFLMLCHVAQTYGSEVILSEAGPPGEVPFFEIWMQNCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWQEACMSISAAILEILNAWENGVLTFESVQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLGTPLYGENTLQFYSERVLIMSSILEHMCXPPKKPIKEVLMSVFSKVLEKGWVDSRSIHIFDTLHMGGVYWFCNNLVKELLKETRKEHAMRAVELLYSIFCLDMQQLTLTLLGHILPNLLTDSSKWHMLMDPPGKALAKLSVWCASSSYTSHNRGQMSAWQRKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDTTILSSPTDRTMSSSLSASQLHTVSMRDPLNRVLANLFLLIASILGAKTAGTHTQFVQWFMEECVDCLEQGSRGSILQFMPFTMVSELVKASTMSSPRIVLAITDLSLPLGRRVAAKAIAAL
Length960
PositionTail
OrganismAnolis carolinensis (Green anole) (American chameleon)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Lepidosauria> Squamata> Bifurcata> Unidentata> Episquamata> Toxicofera> Iguania> Dactyloidae> Anolis.
Aromaticity0.07
Grand average of hydropathy-0.020
Instability index49.61
Isoelectric point6.94
Molecular weight107599.55
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27697
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     211.04|      58|      95|      47|     128|       1
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   47-  104 (98.19/49.31)	LEQAMTGLAPNPL..ILSYLKYAISSQMV.....SSSSVLMAISKFDDF.SRNICVQALLGIMDMF
  146-  200 (74.83/64.96)	LEQ...GAAENQLkmCLDRLVKILSS........TKNRALIHIAKLEETpSWNPVEQSLAKLTENL
  906-  944 (38.02/ 9.08)	LEQGSRG.....S..ILQFMPFTMVSELVkastmSSPRIVLAITDL....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.12|      18|      95|     111|     128|       2
---------------------------------------------------------------------------
  111-  128 (32.68/22.83)	HGKAEECIGLCRALVNIL
  209-  226 (31.44/21.67)	RSQAEECISLVKSIPTML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.59|      39|     186|     675|     719|       3
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  675-  719 (60.13/73.85)	KKPIKEVLMSVFskVLEKGWVDSRSihifDTLHMGGVYWFCNNLV
  865-  903 (67.46/59.18)	RDPLNRVLANLF..LLIASILGAKT....AGTHTQFVQWFMEECV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.66|      71|     259|     488|     569|       5
---------------------------------------------------------------------------
  488-  569 (113.43/89.22)	LLFDISFL........MLCHVAQTygsevILSEA.......GPPGE.VPFFEIWmqnCMPE......EGKILNPDHPCFRPDstkVESLVAL..LNNSSEMKLVQM
  737-  831 (97.23/55.24)	LLYSIFCLdmqqltltLLGHILPN.....LLTDSskwhmlmDPPGKaLAKLSVW...CASSsytshnRGQMSAWQRKRHRED...IEDYISLfpLDDTQPSKLMRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.37|      23|     133|     274|     296|       6
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  274-  296 (44.45/28.14)	PSPLFIL.......EIWKACFVGLIESPEG
  402-  431 (35.92/21.36)	PNPSLILraeptvtNILKTMDSDHSKSPEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27697 with Med24 domain of Kingdom Metazoa
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