<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27679
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSLIGQHPVSWSKNGVIAYADPHSPDANLRITFLETINGINWRFHPPTKYILHPQLHEPQFSHSYTLNTAPSASEHSNSMTSSTIGLHPTPTRTVTTANTTTVSSIPPSAGTSVHSKGNPQFFYSITGVYWNNWLSLPGDMLAVCDELGNLTMMIAGQQPNGANTFERLTMLFQDNVYKIYNHVMSLKPSTSIPLITEKFERKHTKKEYNTTIMDFEWLSATKITMAAKFCALDTTSNTYKNKLQQIPPYGVFHPAFMKYACLGIRKNGQINFWYQFSNSKDHKKITLQLHTSVNQRTKELDWLTFAKITPIVEDQCMLISTYSKLTNKLIFYELHVNWNVNATKPTALNDPTVKIQQILETTIDPVDNEGNPLKLSNIHIMSKTPTENDPSPEILLVYDIMGSRKTLVKRYKLVRTQLPLDFVSILKSENNSGGGQYLRSNRYNFIHQVDLPLEKRVKQVTTELINGFITFYFEDGTTIVYNQGDWKVETERLLNQPLSGNYNNLVTSMLSVNFQFPKLPNLSAIEWVRVSPSLTGIIAKIANKSTPQYFPLMKHDVTDTSKDDLNATAFAFAYVIGTYRQLSAEDLTITCKTHLMQIAKLDENRAKNFVMLIVARIYTFLNVSLDPPKEIMDKFLTGRQFQRITLFQLELGTCFDGSNLDEMARLLLNLKSAHFAFNGVSRNLHFAIEQINTTNAAQQLASGKTFQTVFSKQDLIYSLIPIAKWFVKFITYMIQELLILINNPPNKENTLVIGVFGSKVSRMLILLILVEIKKIVQIITKFPENTYPVLNESSYYLRTVLSDSPVNFEKFETFLVDVNNKFSAYNEQQQKLNPQSQSTQMLRECSLLVRAEVLPEFSKIGEFLLAYSNNVLISHVDAARVYFCDTSGLRISSTELFRPEYCKLLQPLEKGLVIDPDDNPILPLNPGRFSPMVYDGISYDRFTKQEVSEEKIKRCARCGCVTRAGYVVSNDKTITSTIITTKRWPSMYTRNCTCSGMLYELRI |
Length | 1004 |
Position | Tail |
Organism | Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) (Saccharomyces dairenensis) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Naumovozyma.
|
Aromaticity | 0.10 |
Grand average of hydropathy | -0.213 |
Instability index | 33.44 |
Isoelectric point | 8.82 |
Molecular weight | 114290.09 |
Publications | PubMed=22123960
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:EnsemblFungi
|
GO - Biological Function | RNA polymerase II activating transcription factor binding GO:0001102 IEA:EnsemblFungi
|
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IEA:EnsemblFungi
positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
regulation of establishment of protein localization to chromosome GO:0070202 IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly GO:0051123 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP27679
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.46| 20| 59| 46| 66| 1
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46- 66 (36.84/26.48) PPTKYI.LHPQlHEPQFSHSYT
107- 127 (34.62/20.06) PPSAGTsVHSK.GNPQFFYSIT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 39.42| 12| 34| 411| 422| 2
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411- 422 (21.55/15.08) RYKLV.RTQLPLD
443- 455 (17.87/11.10) RYNFIhQVDLPLE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 128.80| 39| 83| 204| 244| 3
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204- 244 (65.03/48.73) HTKkeYNTTIMDFEWLSATKIT.MAAKFCALDTTSNTYKNKL
291- 330 (63.77/41.62) HTS..VNQRTKELDWLTFAKITpIVEDQCMLISTYSKLTNKL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 84.95| 27| 35| 723| 751| 4
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723- 751 (42.48/32.82) IAKWFVKFITYMIQELLILINNPPnkENT
761- 787 (42.46/26.23) VSRMLILLILVEIKKIVQIITKFP..ENT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.87| 12| 36| 345| 356| 5
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345- 356 (21.23/11.58) KPTALNDPTVKI
384- 395 (22.65/12.84) KTPTENDPSPEI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 167.23| 54| 63| 591| 645| 6
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591- 645 (86.70/47.05) TC..KTHLMQIAKLDEN.RAKNFVMLIVARIYTFLNVSLDpPKEIMDKFLTGRQFQRI
654- 710 (80.53/39.64) TCfdGSNLDEMARLLLNlKSAHFAFNGVSRNLHFAIEQIN.TTNAAQQLASGKTFQTV
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