<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27676

Description Uncharacterized protein
SequenceMYNGNNPYQQSNLRSTENQQQQNQAAQQNQQLMQQPSQQYPTGRDLWQSQGRNLYPQPQFQIQQHQVTNKKHPLSNATISTGAMHGKQPMLMANNDVFSIGPYKARKDSCRISVIEKYEIIGYIAAGTYGKVYKAKRKVQQASSDSNCSNVSSSLDSSNNSPMKNIDEVPISQTNSTNVTNFDPKTERIRTASTKQASMFTYNNANTNNNSSSNSDSIDFSTSNGPNSSNDISTTAPMQINTGMGPPKSMVKKSLSQIIMLLKKFKTEKEGLEQLHYTGISQSACREMSLCRELNNKHLTKLVEIFLERKSIYMVYEYAEYDLLQIIHFHSHPEKRMIPPRMIRSIMWQILDGVSYLHQNWVLHRDLKPANIMVTVDGCVKIGDLGLARKFFNMVQTLYTGDKVVVTIWYRAPELLLGARHYTPAIDLWAVGCIFAELIGLQPIFKGEEAKMDSKKSVPFQANQIQRILEVLGSPTLKTWPNINKYPEYDQLMKFQRYKDNLPTWYHSTGGRDKSALDLLYQLLRYDPISRIDAVDALDHHYFTNGEAPVSENVFEGLSYKYPARRIHTNDNDIMNLGIHRNKNLLQQPQSNTNSKSTSTTLGGLGVNRKILAAAAAAAAAVSGLNSKLNEPSKKKRR
Length638
PositionKinase
OrganismNaumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) (Saccharomyces dairenensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Naumovozyma.
Aromaticity0.08
Grand average of hydropathy-0.619
Instability index43.99
Isoelectric point9.43
Molecular weight72140.00
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:EnsemblFungi
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IEA:EnsemblFungi

GO - Biological Process
negative regulation of filamentous growth	GO:0060258	IEA:EnsemblFungi
negative regulation of transcription by RNA polymerase II	GO:0000122	IEA:EnsemblFungi
nuclear-transcribed mRNA catabolic process, non-stop decay	GO:0070481	IEA:EnsemblFungi
phosphorylation of RNA polymerase II C-terminal domain	GO:0070816	IEA:EnsemblFungi
positive regulation of transcription from RNA polymerase II promoter by galactose	GO:0000435	IEA:EnsemblFungi
protein destabilization	GO:0031648	IEA:EnsemblFungi
response to oxidative stress	GO:0006979	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27676
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.17|      17|      17|     213|     229|       1
---------------------------------------------------------------------------
  164-  180 (24.64/13.56)	KNIDEVPISQTNSTNVT
  213-  229 (30.45/18.54)	SNSDSIDFSTSNGPNSS
  233-  249 (26.08/14.80)	STTAPMQINTGMGPPKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.58|      28|      28|       7|      34|       2
---------------------------------------------------------------------------
    7-   34 (49.37/29.11)	PYQQ.SNLRSTENQQQQNQAAQQNQQLMQ
   36-   64 (49.21/29.00)	PSQQyPTGRDLWQSQGRNLYPQPQFQIQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.94|      35|      52|     356|     391|       4
---------------------------------------------------------------------------
  356-  391 (59.57/44.99)	YLHQNWVL.HRDLKPANIMVTVdGCVKIGDLGLARKF
  410-  445 (59.37/39.81)	YRAPELLLgARHYTPAIDLWAV.GCIFAELIGLQPIF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27676 with CDK8 domain of Kingdom Fungi
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