<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27668

Description Uncharacterized protein
SequenceMSSLSTGSSTATTMTTAGTVSTAKSNNSRSSSSSLGSVPSSLLENRKTNKLTQCFDDILKLSTEMMVQQQLKTIQLDSNLINGFNENQQNSLKEKINSFHGILDDLEISINKSLTYLDTISKISIEKRKENIKTKILKEQEEKEKEKQLELLKQKQKQEQEEAEAQALKLKQEEEELERKRKQRKEEQEQQMLLTNKKSPIDNNNNNNNNNNDNNINNNNDNNNNNNNNNNNNKNNNNLIPITTANNNNNDNTGLLGDIQLNFSNEAIDNDLLANFNSNTINPNVNIPNPTTNAITTHINNNNSMNGDIFTDLDAMDISISPDLVNTTSVENSQQQQQQQQIPITNEQQPPDNTLDLTTSSGAGMDPLSNNKDNSNTNINNITDTNNNDNNNNNNNNPLLDLNLDTGNNNNNNIGLQDAGDDYLTLNDFNDLNVDWTNTGNTGDDPNNDLDLNGFNI
Length457
PositionTail
OrganismNaumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) (Saccharomyces dairenensis)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Naumovozyma.
Aromaticity0.02
Grand average of hydropathy-1.160
Instability index39.91
Isoelectric point4.37
Molecular weight50971.24
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27668
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.07|      15|      15|     203|     217|       1
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  203-  217 (33.67/ 7.47)	NNNNNNNNNNDNNIN
  219-  233 (30.39/ 6.03)	NNDNNNNNNNNNNNN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.50|      22|      24|     145|     168|       4
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  126-  144 (24.40/ 9.58)	EKR.KENIKTKILKEQEEKE...
  146-  167 (36.48/19.66)	EKQ.LELLKQKQKQEQEEAEAQA
  170-  192 (31.62/22.38)	LKQeEEELERKRKQRKEEQEQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.62|      37|     160|     244|     284|       5
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  244-  276 (55.09/15.99)	.....TANNNNND..NT.GLLGDIQLNFSNE..AIDNDL.LANF
  319-  360 (38.44/ 9.70)	SISPdLVNTTSVE..NSqQQQQQQQIPITNEqqPPDNTLdLTTS
  425-  455 (39.09/ 7.46)	TLND..FNDLNVDwtNT.GNTGD..........DPNNDLdLNGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.74|      25|      46|      47|      71|       6
---------------------------------------------------------------------------
   47-   71 (41.49/26.04)	KTNKLTQCFDDILKLSTEMMVQQQL
   72-   92 (33.55/19.53)	KTIQLDS...NLINGFNENQ.QNSL
   95-  114 (31.69/18.00)	KINSFHGILDDL.....EISINKSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27668 with Med2 domain of Kingdom Fungi
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