<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27665

Description Uncharacterized protein
SequenceMNYNSTLQAQTKGVGSSPSEPLTMGQKLRASNINKLIQILMKLNFANGGDSNTATTIKEQAKVFENAVFSKFSNDLNSYTKFMNGKMENLVRTSQAKKAKINGLMDSSLLMNRPTGPNNRTTPSGKTLLDKNNTTEQELVKKFQFIPVPMTILENIPKFLTFHANPQNEMFTWPRISKWVIDNKSLFSMNDLAIIKHLYQSQYQNFKQANFNPVSQLNATAYNNSTYINNIPDTTNNNSHNLLNQINEIFIQEQQAYLLNKKKNVVNPDPDQSKLRSMNINTINKPPSPEDWSIIKRISSEISKTQFNLSNLSNSLSGREKLDIKKSLSDNQPLFKKVKFFAIAYFIASKDESFLRDFLKLNLFLREIINKINDGVFIINSMIMNKINLKFQKFWEIMSQQYVKNNTPSQAVPSPIPVDKKLRRQEVKSRYKHHQDIFEGSSTPDLFLSTLSDCLGLSVTTQARMNTMTVYEPILPFTKKTIELINGSSTKKQPFTKTQLKRREKDVFELSIIASDTKLLMKNKNVNSRLESISDKQIANVFKFQNMEQRESETTPPPSNTTSPMIPQKRSILTDTTEQQRRKKPNVSVATPTVPTSTSSLTSTTKTLTSTQISPASSEVNEDESVQQQKSKIFKEVIKNDISNWNWNIWENI
Length653
PositionTail
OrganismNaumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) (Yeast) (Saccharomyces castellii)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetaceae> Naumovozyma.
Aromaticity0.08
Grand average of hydropathy-0.621
Instability index43.47
Isoelectric point9.74
Molecular weight74544.20
Publications
PubMed=22123960

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27665
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.56|      16|      17|     255|     271|       1
---------------------------------------------------------------------------
  242-  257 (23.71/10.74)	LLNQINEIFIQE.QQAY
  258-  274 (20.85/14.08)	LLNKKKNVVNPDpDQSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     380.74|     131|     146|     307|     452|       2
---------------------------------------------------------------------------
  309-  450 (193.31/122.52)	LSN.LSNSLSGREKLDikkSLSDNQPL..FKKvKFFAIAYFIASKDESFLRDFLK...LNLFLREII.........NK.INDGvfiINSMIMNKINLKFqKFWEiMSQQYVKNNTPSQAVPSP.IPVDKKLRRQEVKSRYKHHQDIFegSSTPDLFLST
  451-  598 (187.43/93.27)	LSDcLGLSVTTQARMN...TMTVYEPIlpFTK.KTIELINGSSTKKQPFTKTQLKrreKDVFELSIIasdtkllmkNKnVNSR...LESISDKQIANVF.KFQN.MEQRESETTPPPSNTTSPmIPQKRSILTDTTEQQRRKKPNVS..VATPTVPTST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.07|      16|      16|     198|     213|       3
---------------------------------------------------------------------------
  198-  213 (29.90/17.00)	LYQSQYQNFKQANFNP
  217-  232 (28.16/15.58)	LNATAYNNSTYINNIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.43|      12|      15|     138|     149|       4
---------------------------------------------------------------------------
  138-  149 (22.16/13.89)	ELVKKF.QFIPVP
  154-  166 (19.27/11.10)	ENIPKFlTFHANP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27665 with Med15 domain of Kingdom Fungi
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