<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27656
Description |
Mediator of RNA polymerase II transcription subunit 18 |
Sequence | MVQQLSLFGSINDDSYDLFVSTITTLSGTPPILFSKLSTNWKPNPQYDIEGTNAKNQLVEPNRINLHRELTLDQLRLQEEPAQFDYNILKKINQDHAPFDLTLLDKILKECNTNGDDKKHKSWVFSMSDIPATGNNRKVSVQTIYESLITSTAGIDSSITKFMNELAYVYEYSYITVGVKFYLRHELLIEVCKIWNIISDGQVSTSSQVTSGGYLIKAYVDVNKSTDIDRINYAENILVNLQKELQGYVDLITPDRKSMDSRLGYGI |
Length | 267 |
Position | Head |
Organism | Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) (Yeast) (Saccharomyces castellii) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Naumovozyma.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.331 |
Instability index | 37.23 |
Isoelectric point | 5.17 |
Molecular weight | 30353.98 |
Publications | PubMed=22123960
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364150
|
GO - Cellular Component | core mediator complex GO:0070847 IEA:EnsemblFungi
mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | RNA polymerase II core promoter sequence-specific DNA binding GO:0000979 IEA:EnsemblFungi
transcription coactivator activity GO:0003713 IEA:EnsemblFungi
|
GO - Biological Process | positive regulation of transcription by RNA polymerase II GO:0045944 IEA:EnsemblFungi
RNA polymerase II preinitiation complex assembly GO:0051123 IEA:EnsemblFungi
termination of RNA polymerase II transcription GO:0006369 IEA:EnsemblFungi
transcription open complex formation at RNA polymerase II promoter GO:0001113 IEA:EnsemblFungi
|
Interaction
Repeat regions
Repeats |
>MDP27656
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.75| 22| 173| 44| 70| 1
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44- 70 (35.05/31.64) NPQYDIEGTN.AKNQLVepnriNLHREL
223- 245 (33.70/19.08) NKSTDIDRINyAENILV.....NLQKEL
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