<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27639
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MVTVTDPLTARLEAAIKAWSDFFSDAEHERLDPAIFADQSQTLFANHPLAPVPLADLLLRPTPSNRECVDQRTLQYLQVLQKQGRITTAAVLRALYKYSTAHTRAQTPDGKPKHGAGDSSTNDADVGGSSKADLTSRMVRWRNSYMVEEDVLWRLARAVNHGTGIKTSHDVTEVAKVLARWTALFAEVSAAISRDAFNSMNGLQVKDESEDARNAFVLFYFAFCENQLVNETLSQPVCKDICRKLLDSLDAFLPTLMHLTADITGRLEHFRSEVLARYAPQEKKSMDMPSFMNDLSMSLESFQVPELPVVNTRAGLYIYLGAALVGRPMIDDEALFSYLHNRYQGDLQAMAVHLILASFDLLANAVFRNEGAKTGHLLKSFLINKVPLILVQLVAYAATTMYPFNAEMCITEALNQVDINMFPTLSGMFDMPNNNSFNDSVRQDFCFACQLHGLLSQAAIETLLGDITYQSLPPEGRYVKEQLVQACLQEPDRTLKLIGELDNMNGNVGAAAQAIVEICRDLASKPLSLDVLLLFDKPHKILHPLCELLDNWAGYEEDHGEYQPVYEEFGSVLLLLLAFVYRYNLSTADLGIRSSGSFVAKLLNGVDRCQPLEQLSEQEKSHLGGWIHGLFDTEAGGLGDELMSSCPPQDFYLLAPTLFHQIVNALSAGYLTDEMLKGGLEYLVDVLLLPALVPALLYLSNLLWADNQPIQNAVIKILQPILKPTSISNEASTMLSSVLNIVAKPLEHALKSYQRQDPECQKIEPLLLAIADNLAVSRRTGGADHTELESWCSAQITNPATGALIHGGLAAAVRTTIQQLVQWAQNPTLNSMNGMPAPYTHRQTLAAQQILGPHRLLGIILDELKSSPEPGIAYDVVTTMICAPDVRNSTISSPSTQSNNSSDHNDQAQNHQSQDAKHKHPHRLTLRDALRLEAHDFRAHLRADPVLAETVVRLYRRVEAQLTPLALPLPPAAAAAPAVGVNVGVDAATAAAAAAAAAMMPDALGLGVVGGVELGGMEGAIAAAVAAANGSGTGGAGGDGTQGGAGDAGMGLDGQQQGQGGSSAGDMGLGGGTADDIFSGLSGPDDFGADFGSWSMDLS |
Length | 1099 |
Position | Tail |
Organism | Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Sordariales> Chaetomiaceae> Chaetomium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.047 |
Instability index | 38.29 |
Isoelectric point | 5.00 |
Molecular weight | 118675.43 |
Publications | PubMed=21784248
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP27639
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 125.59| 32| 34| 986| 1019| 1
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987- 1019 (38.57/24.61) .AATAAAAAAAAAMMpDALGLGVVGGVeLGGMEG
1024- 1043 (35.44/14.64) AV......AAA.....NGSGTGGAGG...DGTQG
1053- 1083 (51.57/24.49) DGQQQGQGGSSAGDM..GLGGGTADDI.FSGLSG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 93.05| 29| 33| 635| 666| 2
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635- 666 (46.45/33.22) AGGLGDELMSSCPPqdfYLLAPTLFHQIVNAL
668- 696 (46.60/25.22) AGYLTDEMLKGGLE...YLVDVLLLPALVPAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.55| 23| 29| 791| 819| 3
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791- 819 (28.01/33.50) WcsAQitNPATGALihGGLAAAV..RTTI..QQ
823- 849 (37.55/20.70) W..AQ..NPTLNSM..NGMPAPYthRQTLaaQQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 62.07| 19| 35| 248| 271| 4
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248- 271 (25.73/26.74) SLDafLPTLMHltaDITGRLEHFR
285- 303 (36.34/20.67) SMD..MPSFMN...DLSMSLESFQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 103.57| 31| 35| 354| 387| 5
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352- 376 (27.80/20.16) ........VHLIL...asFDLLANAV.....FRNEGAKTGH
378- 413 (44.48/28.37) LKSFLINKVPLIL.....VQLVAYAAttmypFNAEMCITEA
414- 442 (31.30/13.66) LNQVDINMFP...tlsgmFDMPNNNS.....F.NDSVR...
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.73| 12| 29| 712| 723| 6
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712- 723 (20.09/14.72) NAVIKILQPILK
740- 751 (20.64/15.33) NIVAKPLEHALK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 44.26| 13| 29| 570| 582| 7
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570- 582 (21.71/14.24) GSVLLLLLAFVYR
596- 608 (22.55/15.11) GSFVAKLLNGVDR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.18| 18| 29| 931| 948| 9
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931- 948 (30.95/18.25) RLEAHDFRAHLRADPVLA
957- 974 (30.23/17.63) RVEAQLTPLALPLPPAAA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 130.46| 37| 37| 151| 187| 10
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114- 157 (38.13/26.89) .....HGAGDSSTNDAdvggsskADLTSRMVRWRNSYmveEDVLWRLAR
158- 194 (58.96/46.39) AVN..HGTGIKTSHDV.......TEVAKVLARWTALF...AEVSAAISR
196- 225 (33.37/22.43) AFNsmNGLQVKDESED.......ARNAFVL..FYFAF...CE.......
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