<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27636

Description Mediator of RNA polymerase II transcription subunit 8
SequenceMASLNLAPEELKQLELLRNRFAQLQSSLTSLAGNLIRTEPLPTYESLQASASILQQNLRSIQELMTENSDIFKRIAIHPSTNFPGRTQEHMLLQLLRKKLEPEVESWVEEARETARAAGIDVSKLSGPGGGAPTRGMNGYGDDDEYGLDDEDEGVPSDPFNEQWADMLETFQHSLHHYVTVQLKKQYTVEEQEMGIENVRTGLKRELGDEDEDEDEDEEEEEEGVAGVAGGAASQGAGAGTAGAAAKKPVIQPEYLFWLAARGDTRVSRNIEFEAMRKVAQTAKRPAPPR
Length290
PositionHead
OrganismChaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Chaetomiaceae> Chaetomium.
Aromaticity0.06
Grand average of hydropathy-0.680
Instability index55.97
Isoelectric point4.63
Molecular weight32063.16
Publications
PubMed=21784248

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364144
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP27636
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.06|      11|      64|     141|     153|       1
---------------------------------------------------------------------------
  141-  153 (18.09/17.00)	GDDDEYglDDEDE
  208-  218 (21.97/12.81)	GDEDED..EDEDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.95|      22|      22|      25|      46|       2
---------------------------------------------------------------------------
   25-   46 (37.07/22.41)	QSSLTSLAGNLIRTEPLPTYES
   48-   69 (35.88/21.51)	QASASILQQNLRSIQELMTENS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.90|      13|      26|     190|     202|       3
---------------------------------------------------------------------------
  190-  202 (23.52/15.20)	EEQEMGIENVRTG
  219-  231 (22.38/14.12)	EEEEEGVAGVAGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27636 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGIDVSKLSGPGGGAPTRGMNGYGDDDEYGLDDEDEGVPSDPFNEQWADM
2) EEQEMGIENVRTGLKRELGDEDEDEDEDEEEEEEGVAGVAGGAASQGAGAGTAGAA
118
190
167
245










Molecular Recognition Features






MoRF SequenceStartStop




1) AGAAAKKPVIQPEYLFWLAARG
2) RNIEFEAMRKVAQTAKRPAPPR
242
269
263
290