<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27629

Description Uncharacterized protein
SequenceMTNAAATSAPETAQLAADAAPAPAPAEVPSTTTEKPQQQQQQQQQQQQQQQQQQQSSSSSSALTPSSTSKKQSVPLSALIKSLPSNFDSFLARLDKCLSTPAGIDTVMLFLCYTSKFASAALDKLSQSALRRSAREWIALVAALPRGTTVVFSSPASAVGVGKGAAGGSTALATRALTLSKCLANLSSMLSEARMILRLWALIGMYFWAKGLVKKALCSSSSEKNDEPKPSKAATLLESLRLILCVAFQALENAAYLGQRGILPMRPPQVGKAYIWSARLWGAYVGIELGRLAAERLGPNAPKTAEARSRWAKNTARQLAWAPLTVHWGSEKPLVSELTVGLLASIPGIIQLRDLWASTA
Length360
PositionTail
OrganismChaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Chaetomiaceae> Chaetomium.
Aromaticity0.06
Grand average of hydropathy-0.054
Instability index52.98
Isoelectric point9.89
Molecular weight38301.64
Publications
PubMed=21784248

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27629
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     209.53|      58|      60|     125|     184|       1
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   62-   99 (48.29/21.84)	...................ALTPSSTSKK...QSVPLSAL.IKSLPSNFDSFLA......RLDKCLS
  125-  184 (85.25/51.28)	LSQ..SALRRSAREWiALVAALPRGTTVV...FSSPASAVgVGKGAAGGSTALAT..RALTLSKCLA
  186-  247 (75.99/38.38)	LSSmlSEARMILRLW.ALIGMYFWAKGLVkkaLCSSSSE...KNDEPKPSKA.ATllESLRLILCVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.75|      30|      44|     281|     312|       2
---------------------------------------------------------------------------
  281-  312 (44.06/33.76)	WGAYVGIeLGRLAAERLgPNAPKTAEARSRWA
  328-  357 (51.69/30.21)	WGSEKPL.VSELTVGLL.ASIPGIIQLRDLWA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27629 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTNAAATSAPETAQLAADAAPAPAPAEVPSTTTEKPQQQQQQQQQQQQQQQQQQQSSSSSSALTPSST
1
68










Molecular Recognition Features






MoRF SequenceStartStop




1) ATSAPETAQLAADAAPAP
6
23