<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27604

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSFHPQTPQSPSQFSPATSSDPSLGLSGSVAAAGSGTTTLPTPAHSVNGSSSQLDSFIMLDDSPHKRKRPLEDVGDDDREPKKAHVEDGKLALEDLHLDVGPKYLLLQSRKTPSVALVSLLRPWKTRPRQFAGMFFLPFPRSLLSHPESLPRTSEDLYEMFDLTGLAAEVAREKPNGEKNALRKTYKGHIKRLGVAGHFDVQKKKEDSPSDFLAMLQVPDHEWNVHQVKGRALMDGLSEMTKSSLGRALTMAKGPIAKSVWDTSVLGDIGSNGDSSKAPSAKPTAPNTPLISMPGAAMSRPKAQLLSGQSPARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASKKSLDSPSSHHLTSNLLQSSGTTPPYPSAMRQSSYGPGMVGV
Length404
PositionHead
OrganismHypocrea jecorina (strain QM6a) (Trichoderma reesei)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.06
Grand average of hydropathy-0.673
Instability index57.05
Isoelectric point9.26
Molecular weight43460.35
Publications
PubMed=18454138

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP27604
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.21|      14|      14|     230|     243|       2
---------------------------------------------------------------------------
  230-  243 (24.77/14.93)	GRALMDGLSEMTKS
  246-  259 (24.44/14.64)	GRALTMAKGPIAKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      11|      21|     119|     129|       4
---------------------------------------------------------------------------
  119-  129 (22.03/10.64)	SLLRPWKTRPR
  142-  152 (20.22/ 9.26)	SLLSHPESLPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.89|      13|      21|     193|     205|       5
---------------------------------------------------------------------------
  193-  205 (22.63/14.86)	LGVAGH.FDVQKKK
  216-  229 (21.26/13.56)	LQVPDHeWNVHQVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27604 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GDIGSNGDSSKAPSAKPTAPNTPLISMPGAAMSRPKAQLLSGQSPARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASKKSLDSPSSHHLTSNLLQSSGTTPPYPSAMRQSSYGPGMVGV
2) MSFHPQTPQSPSQFSPATSSDPSLGLSGSVAAAGSGTTTLPTPAHSVN
3) SSQLDSFIMLDDSPHKRKRPLEDVGDDDREPKKAHVEDGKLA
267
1
51
404
48
92










Molecular Recognition Features






MoRF SequenceStartStop




1) KRRKKASKK
356
364