<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27586

Description Uncharacterized protein
SequenceMSGPDAKSFVMSFAAQIEECHLTEAFEKFNHQKTSTEQLIMELIDRITASVDFVLTPPSFVAKDWKMAELAPGAQTLYLACIELMASPHSPETLVSAMINVMQMKPHLRPFNVINCIALILTALPSSYSEALHNELVAVFDNGDTAKLKFEELVFDIYEENLLLNIPSRVKSLNVISQFYFIHCNMTHQPVESTSSMPSASSASAISQQLQPQHPHQLQQQQSHLNLQQQLQELPPLPPMQQVPQQQPLQHHPHHPHHPMDTTQQPSQPQQPPQTPQHRMAPPTPMVPAAPPPSSAQMAAAAAAQQQQQQHQMAAAAMHQQMTPQYPAPMFHHQSPAHHMPYGMTPHMQQAMQQHAAHQQMVQGQMHMNPMMHNMTPQQQQQQYAYMQFLHQQQQQHQQQQQQQQPPHM
Length409
PositionTail
OrganismCaenorhabditis brenneri (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.06
Grand average of hydropathy-0.579
Instability index81.17
Isoelectric point6.19
Molecular weight46353.33
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27586
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.32|      18|      19|     231|     248|       1
---------------------------------------------------------------------------
  236-  253 (37.83/10.68)	PLPPMQQVPQQQPLQHHP
  256-  272 (29.73/ 6.39)	PHHPMDTTQQPSQPQQ.P
  389-  406 (31.75/ 7.46)	FLHQQQQQHQQQQQQQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.54|      14|      70|     298|     311|       3
---------------------------------------------------------------------------
  298-  311 (26.77/ 8.14)	MAAAAAAQQQQQQH
  371-  384 (26.77/ 8.14)	MMHNMTPQQQQQQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      14|      20|      75|      91|       6
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   72-   85 (26.02/ 9.78)	P.GAQTLYLACIELM
   88-  102 (20.32/16.70)	PhSPETLVSAMINVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.85|      16|      20|     197|     212|       7
---------------------------------------------------------------------------
  197-  212 (27.68/11.38)	MPSASSASAISQQLQP
  218-  233 (25.17/ 9.68)	LQQQQSHLNLQQQLQE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27586 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VESTSSMPSASSASAISQQLQPQHPHQLQQQQSHLNLQQQLQELPPLPPMQQVPQQQPLQHHPHHPHHPMDTTQQPSQPQQPPQTPQHRMAPPTPMVPAAPPPSSAQMAAAAAAQQQQQQHQMAAAAMHQQMTPQYPAPMFHHQSPAHHMPYGMTPHMQQAMQQHAAHQQMVQGQMHMNPMMHNMTPQQQQQQYAYMQFLHQQQQQHQQQQQQQQPPHM
191
409










Molecular Recognition Features






MoRF SequenceStartStop




NANANA