<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27583

Description Uncharacterized protein
SequenceMSSSTGHFPGAPINTEPITTMATSTSQPVTSPSTASQVVPATAPGGAAAPASVPGQPAPATSESATDPKKAATDEPRAQSSASNPGGTDPATTTAATTTTDPGSTATTSTATTATTTAATTSTVASTTTTNSTTTIATGRITPTVQQDSQFHEMIKRANNCLFLLRKLRSKQDFITTHCLIGEEPPRSAGFKRDPNGFFDVDIAMQEVMVIYERFNHIASRLPKAVPPTDGVNNMRTLYAQEHTMCHADIKSLFEKMIDCGNWNEKNFQMFHYLAELLRVVNHSRKPNRYPDKIELPRPIFNSKATNGHLAFENAYKVMKKEIVNKSLGIYPTTLLRTTSSIVVEFLFGHGGPKVTFNSELVYTMKFLLVERNGYIEYINMIAPHEDWKFTNNFSGQETVDPLGHSCYEVYRRLTKQANIHLQNCFGSHANRWTALTLLQFIGLFGKFRECFTARCRVCRRHLKNFLPPLIFDIRSPKNGVHDQCR
Length486
PositionTail
OrganismCaenorhabditis brenneri (Nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.08
Grand average of hydropathy-0.386
Instability index45.43
Isoelectric point9.06
Molecular weight53593.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27583
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     129.25|      21|      21|      92|     112|       1
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   11-   29 (22.30/ 6.83)	APINTEP......iTT..MATSTSQPV
   33-   55 (25.38/ 8.66)	STASQVVPA...T.APggAAAPASVPG
   80-  103 (30.36/11.62)	SSASNPGGTdpaT.TT..AATTTTDPG
  104-  126 (27.54/ 9.95)	STATTSTAT.taT.TT..AATTSTVAS
  127-  148 (23.66/ 7.64)	TTTTNSTTT..iA.TG..RITPTVQQD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27583 with Med27 domain of Kingdom Metazoa
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