<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27568

Description Uncharacterized protein
SequenceMHELVSFSQLPALREAQVLNILAGVTGTQPVDICEQRLIFAQVKVPEVAISKKQAQTKQQPQQSKRPSYEQLVRSLQLSQNKSTFTTPQESKSIPWHLRTEQTPSASTTATRPGQTAAPYIVREVALTPATPQILLRLTTPSLYAYKYQYILLGHRFVHGNIVIRVYRLYYASSASEGNASGEEAVEASPPQRQDLKPVDESGSWIVDATVRVEEGAGAEVLERGKRELERFRQGMEGCVDLKAGDRLSLDVRREGDRGSDRKLQIVQTGKVLLAQQCSDLGLRTRARRTWASPRMTFLPSLREVSHETFEDKQRREYEHSLTMAADTSMDVDMDFELDMDNDEELARLQAGTAALSALPSALQPDNDTDAMMTVEDGELQDGGQEILPHKIHISGLETLQTQDIENFTHDHFPSESHVKIEWVNDSSANIVYASGDIAAAALKAFALTPTDDPLEPRRAQQLLTHPDVDLYVRLAVATDVKPVGASKYSKFYLNNPELDPESRPRRGGLRGRGRGNGYRRGGGYQDDRYDRPRRRRSSTIEPTFDVNLYDDDPASIKARITPTAPSSDRSRRPRNGEDLFANRAPRNHSATSRRSSSDLLPNSRPDGRLRNRSASPVRDGDGRYGFTEDQPYRQTARHRTPPPARPRSTAENYGARAELRADLFAHRRTGSELAPGGRVRSPPPSRKAPIELFANKGSTAPAVKELFPDKAGHRRQEAKDIRAEEVVSAIGRFDMSDERDSYGRNGGSRNSGQRNGGDLMAKNRGRVNQNGRLTEENGGDDGFQIRGRGSSGFSILGASKSAMPPPDLFDRRAREGVRGGRG
Length823
PositionHead
OrganismZymoseptoria tritici (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Zymoseptoria.
Aromaticity0.06
Grand average of hydropathy-0.818
Instability index59.67
Isoelectric point9.15
Molecular weight91389.57
Publications
PubMed=21695235

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
mRNA binding	GO:0003729	IEA:InterPro
RNA 7-methylguanosine cap binding	GO:0000340	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27568
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.05|      24|      24|     736|     759|       1
---------------------------------------------------------------------------
  581-  599 (28.96/11.40)	FA.NRAP..RNHSA..TSRRSSSD
  736-  759 (44.60/21.83)	MSDERDSYGRNGGSRNSGQRNGGD
  761-  781 (36.49/16.42)	MAKNRGRVNQNG..RLT.EENGGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.73|      22|      24|      42|      65|       2
---------------------------------------------------------------------------
   42-   65 (28.05/26.68)	QVkVPEVAISKKQAqTKQQPQQSK
   71-   92 (36.69/23.69)	QL.VRSLQLSQNKS.TFTTPQESK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.73|      23|      24|     633|     655|       3
---------------------------------------------------------------------------
  611-  639 (32.90/12.24)	RNRSASP..VRDGDGRYG...........YRQT.......ARH
  640-  680 (28.33/ 9.58)	RTPPPAR..PRSTAENYGaraelradlfaHRRTgselapgGRV
  681-  714 (29.51/10.27)	RSPPPSRkaPIELFANKG..stapavkelFPDK.......AGH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.06|      23|      24|     372|     394|       4
---------------------------------------------------------------------------
  372-  394 (39.07/27.08)	MMTVEDGELQDGGQEILPHKIHI
  397-  419 (38.99/27.01)	LETLQTQDIENFTHDHFPSESHV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.21|      23|      25|      95|     117|       5
---------------------------------------------------------------------------
   95-  117 (42.89/25.95)	PWHLR....TEQTPSASTTATRPGQTA
  119-  145 (35.32/20.07)	PYIVRevalTPATPQILLRLTTPSLYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.73|      28|      30|     234|     262|       6
---------------------------------------------------------------------------
  234-  262 (44.70/33.19)	QGME.GCVDL..KAGDrLSLDVRREGDRGSDR
  265-  295 (39.03/23.50)	QIVQtGKVLLaqQCSD.LGLRTRARRTWASPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.80|      22|      45|     438|     459|       8
---------------------------------------------------------------------------
  438-  459 (38.40/23.30)	IAAAALKAFAL.TPTDDP.LEPRR
  484-  507 (32.41/18.45)	VGASKYSKFYLnNPELDPeSRPRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.21|      11|     273|     509|     519|       9
---------------------------------------------------------------------------
  509-  519 (22.91/11.44)	GLRGRGRG.NGY
  783-  794 (18.31/ 7.71)	GFQIRGRGsSGF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27568 with Med18 domain of Kingdom Fungi
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