<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27563

Description Uncharacterized protein
SequenceMAANYWDSTQAKFWTFAKAELSDLRKDLEKTNQPLHNRYTLPDRRLMNIYIQQQLVKLARRMSLRQQALATAQIYIKRFYLRVEMRKTNPYLIMATAVYLACKMEECPQHIRLMLGEAARQWPELGVTETSKIGECEFALISTLSSRLICHHPYRSLSELGPIFGLSSEETQLAHSILNDSYNTDLPLLYAPHIIAITAVFLAVVLRPSGQPPVSGNAAQQAFLGGFSGLKQAGPKLSKLVDWLAESKVDMNSIVDATQELVSLYEVWESYSERTCKEAITKFVKDAGMAGGGLLNK
Length297
PositionKinase
OrganismZymoseptoria tritici (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Zymoseptoria.
Aromaticity0.09
Grand average of hydropathy-0.146
Instability index50.29
Isoelectric point8.69
Molecular weight33435.29
Publications
PubMed=21695235

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27563
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.55|      30|      99|      90|     121|       1
---------------------------------------------------------------------------
   90-  121 (51.22/42.76)	PYLIMATAVYLACKMEECPQhiRLMLGEAARQ
  192-  221 (53.33/37.19)	PHIIAITAVFLAVVLRPSGQ..PPVSGNAAQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.83|      30|      39|      10|      41|       2
---------------------------------------------------------------------------
   10-   41 (43.48/43.09)	QAKFWTFAKaELSdLRKDLEKTNQPLHNRYTL
   52-   81 (49.36/37.32)	QQQLVKLAR.RMS.LRQQALATAQIYIKRFYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27563 with CycC domain of Kingdom Fungi
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