<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27558
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDSNQIEEASMVDAAMMDPTMEDLFGEAANDLAVGDLGVGLPPIPLPPSLMLRIAELQHKGCCTMVPAEGNISNDITRNELHAVVGMHWLAGPYIRPANKIGNKWEAQLQQRDQHSIKIHHPAMGRHAVLYITRSTELTLLYQNEGQGWQSTSIVIDEVRSSDQIISHAAMGEEGADLLVVTFDHSSRMRLYRVSIEWNATQHSRQAGMVYTLIAPTMEVHHLTASHHTRAQHAHSAQLTHLEIIPAVPEAAQTMPTAATILAVFTQTSVPSDANPSQNAYSIISRWRVESLMPTLHDSFKKLSNARADSNGVLNPTTVLRRESDIITNKPILSIKSQMFDTMLAFTSSDGSIDLRDRLTMDQLGPFGLPTTVSSLLQAGFDHIASTQNLHVALSADASGLATISASDNSLTARPMTFTHGWTPSTPSALLDNTPYLEAGTVCLARQYAFLCYNSMSNDEVLSLFPSPAPDPSLHTTFLTQIFKMVNRSPDISMHENARQQMAVLKEPIVPRVLSAQLSLGTEPITGNRNVAAQYAYIFLNLRHIGTALAHTISQKDLSRVSPEAVHSLRPLVRWSIDLMIHIVSALSQLRGSNPSTTSASPILPLLLASFSRALLRFQVLWVIKYLHLLQQIIPRLPTLAQRTELAATLELGTKSLPFKLPALEALLVDVDSAIRQVYSSGEVNAERRGEIEVGLICGRGEVPRELQAVVARLVDVGVGKVLDVEGTDVVKLCFWDTTWLGIERVQTPPPRSSHTNGTHTSKTSPTEAVFPGDMEIGGRWGYDIIRKVPLTEGMVVRECRRCGAVMEDFSPERVRASPGWLGHAQKNCVCMNYWVCG |
Length | 838 |
Position | Tail |
Organism | Zymoseptoria tritici (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Zymoseptoria.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.077 |
Instability index | 47.20 |
Isoelectric point | 6.17 |
Molecular weight | 92034.26 |
Publications | PubMed=21695235
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP27558
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 759.70| 194| 195| 213| 407| 1
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16- 130 (107.95/65.32) .................................................................................................MMD.PTME.........D...LFGEAANDLAVGDL..GVgLPPIPLP...PSLMLRIAELQHKGCCTMVPAEG.NIS......NDItrnelHAVVGmHWLAGPYIrP..AnkIGNKWEAQLQQRDQHSIKIHHPAMGRHAVL
131- 325 (283.97/186.75) YITRSTELTLLYQ..NEGQGW....QSTSIVIDeVRssDQiISHAAMGEEG.....ADLLVVTFD...HSSRMRLYRVSIEW.NATQHSRQAGMvytLIA.PTMEVHH.LTASHH...TRAQHAHSAQLTHL..EI.IPAVPEA...AQTMPTAATILAVFTQTSVPSDA.NPS......QNA.....YSIIS.RWRVESLM.P..T..LHDSFKKLSNARADSNGVLNPTTVLRRESD
326- 516 (241.47/162.34) IITNKPILSIKSQMFDTMLAF....TSSDGSID.LR..DR.LTMDQLGPFGLpTTVSSLLQAGFD...HIASTQNLHVALSA.DASGLATISASdnsLTA.RPMTFTHgWTPSTP...S.ALLDNTPYLEAG..TV.CLARQYAflcYNSM.SNDEVLSLF.....PSPApDPSlhttflTQI.....FKMVN.RS.......PdiS..MHE......NAR.QQMAVLKEPIVPRVLSA
525- 658 (126.31/78.23) ITGNRNVAAQYAYIF...LNLrhigTALAHTIS.QK..D....LSRVSPEAV.HSLRPLVRWSIDlmiHIVS......ALSQlRGSNPSTTSA.......sPILPL...LLASFSralLRFQVLWVIKYLHLlqQI.IPRLPTL...AQRTELAAT.LELGTK.SLP........................................................................
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