<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27555

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSTSDGERSPKRQRLESYSPASPQPTVDTRHFVPPQTPPPSVRMSPSWTAHTLPAQPTGSGTSTTFPTPPSTAGYLGHMAGRGAGSEGGGDSGHQTPAGEDEGYARRDHDGDAEMTDRPESGNDGVSSVDAEHRRTDHEREGAGGDITAPVPGAGVLYKLSTAPIAISRPHPSQDLIQLYDLKRIQAAVARRDPVTGEKINVLRKSYANKVKKLGLEGLNKAQSNLHELEGLLDPMWNNDAGNGATLWENHCEPMRMDKADVQEDLLNKLDDALRMKPGRLPAKEHEQWKSMLGLDEAIAPAVATKGGNTPNAAKLSGTSAFAKTSPGAGARNSAPASPRSLSRPDRSNKRRRYDDTSYEGYQQGFEDDGYSTGGVDDTGRRGSGAKRQKRKPLQICDQQTIGKFSRLQTVPRLQTVSSLPMSAFTCGAVTDMSQQDFASSANSPAFTNGSGSNGMVGRAVSFTMLVYGA
Length470
PositionHead
OrganismZymoseptoria tritici (strain CBS 115943 / IPO323) (Speckled leaf blotch fungus) (Septoria tritici)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Zymoseptoria.
Aromaticity0.05
Grand average of hydropathy-0.798
Instability index55.66
Isoelectric point7.75
Molecular weight50212.95
Publications
PubMed=21695235

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP27555
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.94|      18|      19|     143|     160|       1
---------------------------------------------------------------------------
  143-  160 (32.33/20.67)	AGGDITAPVPGAGV..LYKL
  163-  182 (28.61/17.39)	APIAISRPHPSQDLiqLYDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.96|      25|      26|      50|      75|       2
---------------------------------------------------------------------------
   50-   75 (43.10/18.15)	AHtLPAQPTGS..GTSTTFPTPPS.TAGY
   77-  104 (34.86/11.11)	GH.MAGRGAGSegGGDSGHQTPAGeDEGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.67|      17|      17|     220|     236|       3
---------------------------------------------------------------------------
  220-  236 (29.72/21.43)	NKAQSNLHEL.EGLLDPM
  238-  255 (27.95/19.72)	NNDAGNGATLwENHCEPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.19|      13|      18|     110|     122|       4
---------------------------------------------------------------------------
  110-  122 (23.55/13.63)	DGDAEMTDRPESG
  130-  142 (23.63/13.70)	DAEHRRTDHEREG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27555 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APAVATKGGNTPNAAKLSGTSAFAKTSPGAGARNSAPASPRSLSRPDRSNKRRRYDDTSYEGYQQGFEDDGYSTGGVDDTGRRGSGAKRQKRKPLQICDQ
2) LLNKLDDALRMKPGRLPAKEHEQWKSMLGLDEA
3) MSTSDGERSPKRQRLESYSPASPQPTVDTRHFVPPQTPPPSVRMSPSWTAHTLPAQPTGSGTSTTFPTPPSTAGYLGHMAGRGAGSEGGGDSGHQTPAGEDEGYARRDHDGDAEMTDRPESGNDGVSSVDAEHRRTDHEREGAGGDITAPVPGA
300
266
1
399
298
154










Molecular Recognition Features






MoRF SequenceStartStop




1) LESYS
2) LIQLYDLKRIQ
15
176
19
186