<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27553

Description Uncharacterized protein (Fragment)
SequenceMSFLLNMIHGKFTTIPQQEEDCTDKVVIITGGNGGIALEAARHFTQLSAAQVILACRSLEKGDHAKKDIEETTGKQNVVEVWHLDLASHDSIREFADRVNKLDRLDVFINNAGLLVFKRELIEGHESMLSINVISTALLTLLVLPALRQTSNRFNIIPHIVIVSSDAAFEGRLPVQEPNFIKALDEQPSVLEHYSKTKLVQLIFMTQLAKAIEASGKGYIVVNGVHPGFCSTPLFDNTPWPFNLIFKGLLALFGRTPEVGSRALLAGAFADESLNGKFMSNGAFHELPKIMQGDEGEEMCRKVWEELISILEEIEPGVTKKVLWRLDLSKLMVLPVLFSAEQIRAKAPLFIDRSRDQPFNHRYEYPFAMDSRAAAAEAMRSAIEYWSQFVARCISQRLDTEKFENYVRLVHDQHPLPPALVADFFLRPQPSNDNSLDPRIPPYLQVLTRLGYVDAPSILKALYKYSSLHAYAQQPNANDGKETEKETEQSDDKEKDEQKQKVTRWKSSYWAEEVLFYGITKSVVEGKAIRDSKTALDMTRIISKLMVLFTTAFAADMLEQLHTAQVRDEMESSRAALVARVTAD
Length584
PositionTail
OrganismFusarium oxysporum (strain Fo5176) (Fusarium vascular wilt)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium> Fusarium oxysporum species complex.
Aromaticity0.08
Grand average of hydropathy-0.188
Instability index40.51
Isoelectric point5.77
Molecular weight65767.61
Publications
PubMed=21942452

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
oxidoreductase activity	GO:0016491	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27553
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.70|      27|     211|     304|     357|       1
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  328-  357 (41.54/60.00)	LSKLMVL.PVLFSAEQIRakaPLFIDRSRDQ
  542-  569 (41.15/12.77)	ISKLMVLfTTAFAADMLE...QLHTAQVRDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.55|      17|      17|     275|     291|       2
---------------------------------------------------------------------------
  275-  291 (31.23/20.75)	NGKFMSNGAFHELPKIM
  295-  311 (30.32/19.95)	EGEEMCRKVWEELISIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.37|      45|     420|      38|      83|       3
---------------------------------------------------------------------------
   38-   83 (72.19/58.17)	LEAARHFTQLSA.AQVILAC..RSLEKGDHAKKDIEETTGKQNVVEvWH
  459-  506 (67.18/49.00)	LKALYKYSSLHAyAQQPNANdgKETEKETEQSDDKEKDEQKQKVTR.WK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27553 with Med5 domain of Kingdom Fungi
Unable to open file!