Description | Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MENGHMNGVRTHHDRNSWTNGVNGGVVKREGSPDKGKALANMSGSSAMTNGGSASFMDVDSQPPGGSKFNDLPEEIQHITADIMPLSLLLTRLSQWTHSKLQDEIAYLASKPLPQPVLNGNTSHQSADNHDTSQESLEKKVHLLNFLQDMHSKWVKTLVITEWSKKAAQVGALIDIRVHLLTKQAHYQELFWELIRMKQDLHWAKVPGPDLKTALEVLTTGQAPWMPELGYIEPPPITWEEKEAFIDNINTMLSVRLTFDEHEKIPAPFRDYNIANGRVTFKAKGEFEVDLTIGDEDFEQQFWFIDFRFLFTPAPAELSHGVRTFLENKINIILGNEGLAGCYKYLHEFVLTQKIVEFRRQANELAVGRWVDTLKVEKLNRAMSIQYWLKPPNSLEGPSSQTAKSWILLGVWSENSVQEDLDSKPSSYINLRWFRDNKEVKDFEIPLDVETISAEKLLTAVIASHVEYILTSISSKLLSKPRFAQKHARLDVKISKEEPQNSSLAVQLFDNDEAVIKIEPLTGLFTLFPRSPVFLKGQMKLNTSSNAAEEGAHLMEQLRFDYTVKDLNSRVRSIGWFVCRPPITQEETKAIVYSDASGSREPFKAVWLRKANWMTRQWFVMMSMSLGGDQWWLIDLSPPKPNFPAGRLRLFTKMPMTSNQLTLSDTFFRNLSVYAAGMISHITDLRKLHTLKKSHTALELPNHSLPPQVRLPTIYVRLSEMLEKRPGSSSRTLAWAKDFVPIIFKGVRTHTGDQEGPANATAAQVRRDTPAKIRAEARLTVIDRSKFKSLRGNVDHDVVYNHRTGQFSLKLRADMGTPVVDLLADRVQALERLMEFVEAIRLAGSNAIPQSVALREVVFTYSNDPAETVSNPPQGPRAWSVHLDLPKGAKVILTLEKGNPHMRALDMLQEMAQSTKTELLPSYLPFSLPLYRVLDRIEDEWDNIAAKNAGSVAIVVKAAEWVTVRFKLPAPTTRRLLCLDIRTMGRKGRLLWHVKRTDEKGHERPLNGPQDEFDTLLQRSVWHAHGDGRKSFGTSAAADPKIGIETLLWSISESVKSLVGTAPPPPITAPHPGGGVQDVKQSPQQPPQQLVVTQATQAAQGIPPQRPKQQPPPSSQSQQQHRSVNQPQAQPQPQALPQTQVQLPQAQVAQLQAQRQAQARANNNRFVNRAHPGQPQQRQPGPPTQAQQQQQRYQIQQQAQAMQRMQQQQQQQAAQQHAQQQGGQVQQGQRPVHGGQGGPQGVPQGQPGQGGAGGGGMGGKNAPVVVID |
Length | 1268 |
Position | Tail |
Organism | Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Sordariaceae> Sordaria. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.510 |
Instability index | 47.07 |
Isoelectric point | 9.23 |
Molecular weight | 141946.80 |
Publications | PubMed=20386741 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364147 |
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP27506 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 172.40| 21| 22| 1187| 1207| 1 --------------------------------------------------------------------------- 1108- 1133 (27.14/ 9.59) KQqpppssQSQQQ.......H.RSV.NQPQAQPQP 1134- 1161 (22.41/ 6.64) QA......LPQTQvqlpqaqV.AQLQAQRQAQARA 1162- 1179 (24.13/ 7.71) NN......NRFVN.......R....AHPGQPQQRQ 1185- 1205 (37.73/16.20) QA......QQQQQ.......R.YQIQQQAQAMQRM 1206- 1223 (32.58/12.98) QQ......QQQQQ.......A.AQ.QHAQQ..QGG 1224- 1245 (28.42/10.39) QV......QQGQR.......PvHGGQGGPQGVPQG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 116.89| 32| 39| 576| 609| 2 --------------------------------------------------------------------------- 576- 609 (53.88/37.07) WFVCRPPITQEETKAIVysDASGSREPFKAVWLR 618- 649 (63.02/37.14) WFVMMSMSLGGDQWWLI..DLSPPKPNFPAGRLR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 754.71| 253| 737| 8| 286| 3 --------------------------------------------------------------------------- 8- 286 (383.07/322.02) GVRTH.HDRNSWTNGVNGGVvkREGSPDKGKALANMsgsSAMTNGGSASFM.DVDSQPPGGSKFNDLPEEIQhitADI.MPLSLLLTRLSQwTHSKLQD..EIAYLA.SKPLPQPV.LNGNTSHQSADNHDT....SQESLEKKVHLlnflqDMhSKWVKTLVITEwsKKAAQVGALiDI........RVHLLTKQAHYQ.ELFWELIRMKQDlhWAKVPGPDLKTAleVLTTGQAPWMpELGYIEPPPITweeKEAFIDNINTM.LSVRLTF.....DE..HEK.IPAPFRDYNIANGRVTFKAKGE 746- 1027 (371.63/239.57) GVRTHtGDQEGPANATAAQV..RRDTPAKIRAEARL...TVIDRSKFKSLRgNVDHDVVYNHRTGQFSLKLR...ADMgTPVVDLLADRVQ.ALERLMEfvEAIRLAgSNAIPQSVaLREVVFTYSNDPAETvsnpPQGPRAWSVHL.....DL.PKGAKVILTLE..KGNPHMRAL.DMlqemaqstKTELLPSYLPFSlPLYRVLDRIEDE..WDNIAAKNAGSV..AIVVKAAEWV.TVRFKLPAPTT...RRLLCLDIRTMgRKGRLLWhvkrtDEkgHERpLNGPQDEFDTLLQRSVWHAHGD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 78.68| 24| 39| 288| 312| 4 --------------------------------------------------------------------------- 288- 312 (37.95/30.24) EVDLTIGDEDFEQQFWFIDfRFLFT 329- 352 (40.74/26.90) KINIILGNEGLAGCYKYLH.EFVLT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.99| 20| 22| 1067| 1087| 5 --------------------------------------------------------------------------- 1067- 1087 (34.16/18.77) ITAPHPGGGVQDV.KQSP.qQPP 1090- 1112 (26.83/10.14) LVVTQATQAAQGIpPQRPkqQPP --------------------------------------------------------------------------- |
IDR Sequence | Start | Stop |
1) LVGTAPPPPITAPHPGGGVQDVKQSPQQPPQQLVVTQATQAAQGIPPQRPKQQPPPSSQSQQQHRSVNQPQAQPQPQALPQTQVQLPQAQVAQLQAQRQAQARANNNRFVNRAHPGQPQQRQPGPPTQAQQQQQRYQIQQQAQAMQRMQQQQQQQAAQQHAQQQGGQVQQGQRPVHGGQGGPQGVPQGQPGQGGAGGGGMGGKNAPVVVID 2) MENGHMNGVRTHHDRNSWTNGVNGGVVKREGSPDKGKALANMSGSSAMTNGGSASFMDVDSQPPGGSKFNDLPE | 1058 1 | 1268 74 |
MoRF Sequence | Start | Stop |
NA | NA | NA |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab