<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27504
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MSGHDIPIQLLDGSSMDVQHMDTAMNLDDVDVDLFGDSVMVDTALDGLSASRPMPSKHLRQRLDDLRTHGCHQAIAWSRQGTIASITKDGRSVEFRFLRCRPEDAGWELSEPYVYSTAVIPMHTTAGPIVHLAWSNTQAPELAVVDAVGRITILNLTIMLNRPFITRKWDADSVDDLRAVVGCYWLPVFNPRPFNALYGSAVWVQPEDAKALGDGLYKYEVSYAMTTGPHHPNTNRNALISITTNGLLRLVFQNNNGRVEETAIELESITSSDDLITHAALCNDRNTLLIALATASKQLRIVTAMISWGNDKASEKQSHPQNANLTPSLLEHHVAVAPWLQHDSNDPVLDESMSQLSHIEFLPSIPKDKNLQAHYNPVVLTVRSHLPAEGASLYEQEPTSVIDRWEVVSEQPQTLHPAFAQLNTGNITTNPNPMTRLRKLDSVVIPKIVVSVQVMYLGKVVCFAFSDGTIQYRDRVTMMEMFNEHIVHRVLSPHDVGFQYTNDTPCLQVAFSPTNCSYVQISDDWDIKWNSMRYTLADPSTALQDAQQSAVMAALILALSSTVTASNNFDDILAMARPFNENPQFAASWVRGTVNLLKMNFDFSDEALNDSLIRNPFLQMCLSILSHMSFRGEFRPRSYEGKLSFLILQVRNFIVLVSLSLNAPKSLGTSPLDESEVVEVLVGCVTWAHTLMGWVVDCLFDLADDPAFMSILNEQKRFPDLANFLKARGDVSLHLLCCSSARGLITAACRRLAHLEGMSFRAVRYWEASRLKTENNDGSGGGKVLPDSLYFAYQKMQHSAQACLIKVQEFEKILQGFAQDVRTAYQTSLSRRQSGSQQPPQQHPSPQQNKNQQPQNAEDQFIKKAQAHCELDMLLGANPPPCFREVLLKFFTQTLPVLKSHVDPAKLYFANYEILDIEENPRILAARKARRKYIDVFTRREITFPTTSSGDAARGGGGSGGVGGEEDVKRGGAVGAGEGQTPNQNTLALGGGGISIKIELGAAGSTPNLKGGISTPGGRWW |
Length | 1021 |
Position | Tail |
Organism | Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Sordariales> Sordariaceae> Sordaria.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.216 |
Instability index | 42.21 |
Isoelectric point | 5.86 |
Molecular weight | 112984.96 |
Publications | PubMed=20386741
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP27504
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 103.62| 31| 103| 101| 139| 1
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101- 139 (47.51/55.78) RPEDA...GWELsepYVYStavIPMHTTAGPivHLAWSNTQA
205- 238 (56.10/38.78) QPEDAkalGDGL...YKYE...VSYAMTTGP..HHPNTNRNA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.73| 21| 109| 52| 72| 2
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52- 72 (41.96/29.70) RPMPSKHL.RQRLDDLR.THGCH
162- 184 (31.77/20.55) RPFITRKWdADSVDDLRaVVGCY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 125.01| 37| 177| 298| 398| 5
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346- 383 (59.07/134.26) DPVLDESMSQLSHIEFLPSIpKDKNLQAHYNPVVLTVR
615- 651 (65.94/16.48) NPFLQMCLSILSHMSFRGEF.RPRSYEGKLSFLILQVR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 52.93| 15| 177| 298| 338| 7
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321- 338 (22.45/60.15) QNANLTPSLlehHVAVAP
499- 513 (30.48/ 6.95) QYTNDTPCL...QVAFSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 49.85| 13| 383| 192| 204| 10
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192- 204 (26.50/17.79) RPFN.ALYGSAVWV
577- 590 (23.35/14.71) RPFNeNPQFAASWV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 43.46| 12| 115| 783| 794| 12
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783- 794 (23.62/16.23) KVLPDSLYFA.YQ
901- 913 (19.85/12.41) HVDPAKLYFAnYE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.93| 13| 33| 946| 958| 14
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946- 958 (24.08/12.12) TTSSGDAARGGGG
981- 993 (24.85/12.72) TPNQNTLALGGGG
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