<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27503
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MPRGPATAGLSAAVGQWTKFLGRAEAKRLDPSDFARFVPILSSDFYPLPPIVIANLLLKPTKQSSYSLDPRRLQYLTILLNQKLVNIQSVLKVLHQYSTSHAKIQSQHHADATHEAATANKGDQGQQGDKKPKRVFWQNSFNDEEVIFLQLSKVITHGQGIRHASDAYEMAANLSKWITLYIDVIAAFSRDTFGNIQNMRTRQDMENSLQAFSLLLVHFLGNQRVVSAFSRPDAKGHRKRLAASIDQLIPYILQNPNTSGIAVKLEFSRGQTLAGEESSDLKDAAVAEMHSYMDNMIGLDAWQIPDIPLVNSRAGLYIYINAALVGRPLIDDHSLYTYLHNRYQGDLQTTAIHLILASFDVLANAVFRYEGSKTGHLLKSYVVNKVPLILGNFAASSSPMYPFDAEFCISQALGQVDTNVFPTLSNMFDMSNTSSSFQDSVRQDFCFACQLHGLLSSSAIETLLGEITYQTLPDEGRYVKETLVQACLGDFERSQKLIGELDNMNGNVGAAAQAIVEVIGTLCRNKETMTLKQLCSRLASKPSSLDILLLFDKPYKILHPLCELLDNWGGYDEDQGEYQPVYEEFGSILLLLLAFVHRYSLTPTDLAIRSPDSFVGKLLGRGSLSRPLDELSEQEKSHLNGWVHGLFDSEAGGLGDDLMSSCPPQDFYLLMPTLFDQIVMALNLLDTLLLPSLVPALLFLANNLRTDKQAGQAAVIKILQLTLRPNSISNEASIMLSSVLNIVAKPLELSLRSYQRQVPASQQVEPLLRALKENLAVSGRTGGADHSELENWTGTHHNGSGSVGGLYGAIRHTVQNLVQWAQNSPGNGVPTTYTHRQILVALQICGAKRVLSALLKELKVQTEAGNGPVAYDVVTAIICAPDVHNSPVMDDDPASTRGADANHNHTVQRKQRRITLREALKFEAEDFKKIQKSDPLMAETVVRLHRRVEAQMTLPPPPPPPAQHLHHHQQAMLQPELSALGVVAGDTMGDSMMNAAAVAVSSGDHHQSVDAMSLDAAGMGVGGLDVGGAGGMDLSGMGDMGMGGMGGLMVNTNTGGSVTGIQSGGGAAGGGRGGAGGAGAGTAGNVGGGAGGGAGGGSGAGGAGGDLSGDDIFSGLGTGDFTTDFGNWDTMELG |
Length | 1134 |
Position | Tail |
Organism | Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Sordariales> Sordariaceae> Sordaria.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.125 |
Instability index | 38.34 |
Isoelectric point | 5.74 |
Molecular weight | 121855.78 |
Publications | PubMed=20386741
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP27503
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 158.93| 24| 25| 1056| 1079| 1
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779- 804 (23.07/ 7.76) ...GR...TGGADhselEN..WTG..THhNGSGSVG
1024- 1041 (26.30/10.03) LDVGG...AGG........mdL.......SGMGDMG
1043- 1069 (39.92/19.66) GGMGGlmvNTNTG....GS..VTG..IQ.SGGGAAG
1070- 1095 (40.37/19.98) GGRGG...AGGAGagtaGN..VGG...G.AGGGA.G
1096- 1117 (29.28/12.14) GG.SG...AGGAG....GD..LSGddIF.SGLG...
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 138.30| 37| 37| 387| 423| 2
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354- 385 (40.86/26.54) .LILASFDVLANAVFRYEG....SKTG.HLLKSYVVNK
387- 423 (63.04/45.30) PLILGNFAASSSPMYPFDAEFCISQAL.GQVDTNVFPT
425- 453 (34.40/21.07) SNMFDMSNTSSSFQDSVRQDFCFACQLhG.........
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.84| 18| 18| 670| 687| 4
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670- 687 (31.64/16.85) LMPTLFDQIVMALNLLDT
689- 706 (27.20/13.50) LLPSLVPALLFLANNLRT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.21| 19| 37| 822| 845| 5
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822- 845 (24.26/30.14) QNSPGNGvPTTYthrQILVALqIC
861- 879 (34.95/20.16) QTEAGNG.PVAY...DVVTAI.IC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 46.93| 15| 37| 612| 627| 8
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612- 627 (23.32/17.02) DSFVGKlLGRGSLSR.P
648- 663 (23.61/12.16) DSEAGG.LGDDLMSScP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 112.36| 35| 38| 156| 190| 9
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156- 190 (61.79/41.45) THG..QGIRHASDAYEMAANLSKWITLYID...VIAAFSR
192- 231 (50.56/32.59) TFGniQNMRTRQDMENSLQAFSLLLVHFLGnqrVVSAFSR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 257.16| 83| 269| 242| 335| 10
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242- 335 (124.42/99.96) AASIDQLIPYILQNPNTsgIAVKLEFSRgqtLAGEESS.D...LKDAAVAEMH...SYMDNMIGLDAWQIPDIPlVNSRAGLYIYINAALVGRpliddHSL
512- 601 (132.74/78.61) AQAIVEVIGTLCRNKET..MTLKQLCSR...LASKPSSlDillLFDKPYKILHplcELLDNWGGYDEDQGEYQP.VYEEFGSILLLLLAFVHR.....YSL
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