<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27496

Description "WGS project CABT00000000 data, contig 2.3"
SequenceMAANYWESTQRKHWLFTKDELAAMRAKLEAEDPNLVASFPLPQLRHLNIYFNQQINRIGKRLQIRQQALATAQVYIKRFYTKVEIRRTNPHHVIVTALYLACKMEECPQHIRIMANEARTFWPTDFQSQTDVARIGECEFYLISEMSSHLIVHSPYRTLTILQGELGLAQEDVNLAWSVINDHYMTDLPLLYPPHVIALTAILLALVLRQDPSGRLPGTAASNSGLAAASAALAQAQAQAQARAAMMAGRWPGCAWSRPPVIFWIAGYASTPVTSRRRPCRRDQEPTHGKGSPICGVAL
Length299
PositionKinase
OrganismSordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Sordariales> Sordariaceae> Sordaria.
Aromaticity0.08
Grand average of hydropathy-0.158
Instability index62.78
Isoelectric point9.30
Molecular weight33610.39
Publications
PubMed=20386741

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.50|      47|     101|      62|     108|       1
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   62-  108 (79.83/53.28)	LQIRQQALATAQVYIKRFYTKVEIRRTNPHHVI.VTALYLACKMEECP
  124-  156 (45.49/27.63)	TDFQSQT.DVARIGECEFYLISEM....SSHLI.VHSPY.........
  166-  212 (70.19/46.08)	LGLAQEDVNLAWSVINDHYM.TDLPLLYPPHVIaLTAILLALVLRQDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27496 with CycC domain of Kingdom Fungi
Unable to open file!