<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27455

Description Mediator complex subunit 25
SequenceRFMGGGGESCSLIAEGLSTALQLFDDFKKMREQMPDHTGFCLLICNSPPYLLPAVEETTYSGYTTESLVQKIGERGIHFSIVSPRKLPALRLLFEKAAPPAMMETQPADVSQDPRHMVLVRGLVLPVGGGSGPGSLQPKQPVPLPPAPPPGASLSAAPPQPLPPVSQPYQVPSNLSAAQVAAQNAVEAAKSQKAGLGPRFSPINPLQAAAPGVGPPFSQAPAPPLPPGPPGAPKLPPASQPNLVAAVAPGPGLAPSAQPGGPPMAGPVAVAGVSGPASAQLGGPGLGAGQQSVTNKVLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNQGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFHFTNKDLESLKGLYRIMGNGFAGCVHFHHTAPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQQQKLEQLQQQMGGPVAPPGLGPLLEEQQRPPQSLLQLRQPQPQPPGGVGVGVTGAGGQPQPPPGPAQPPPGGPPPGAPPPGAPPPGPLLRPQNPGANPQLRSLLLNPPPPQARGPPPQASLHHLQPPGAPSLLPPSHQGLGQPPLGPPLLHPPPAQSWPGQLPPRAPLPGQMLLSGGPRGPVPQPGLQPPSVMEEDILMDLI
Length648
PositionUnknown
OrganismMonodelphis domestica (Gray short-tailed opossum)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.284
Instability index62.79
Isoelectric point9.46
Molecular weight67425.21
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27455
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     393.84|      47|      60|     527|     573|       3
---------------------------------------------------------------------------
   86-  141 (44.26/ 6.38)	KLPALRLLF.EKAAPPA.....M.MET.QP.ADVS..........................QDPrhmvlvrglvlpvgG.....GSG.PGS.LQPKQP.
  142-  176 (44.32/ 6.41)	...........VPLPP.........AP.PPGASLSAA........................PPQ..............P.....LPPvSQPYQVPSNLS
  232-  275 (50.50/ 8.63)	A.PKL.......PPASQpnlvaA.VAP.GP..GLAPS........................AQP..............G.....GPPmAGPVAVAGVSG
  441-  476 (52.95/ 9.51)	NHKQVQQQK.LEQLQQQ.....M.GGP.VA................................PP..............G.....L....GPLLEEQQRP
  477-  541 (56.84/10.91)	..PQ..SLLqLRQPQPQ.........P.PGGVGVGVTgaggqpqpppgpaqpppggpppgaPPP..............G.....APP.PGPLLRPQNPG
  542-  585 (84.25/20.76)	ANPQLRSLL.LNPPPPQ.....A.RGP.PPQASLHHL........................QPP..............G.....APS....LLPPSHQG
  587-  632 (60.71/12.30)	GQPPLGPPL.LHPPPAQ.....SwPGQlPPRAPL.............................P..............GqmllsGGP.RGPV..PQ.PG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.69|      25|      26|     369|     394|       4
---------------------------------------------------------------------------
  377-  402 (40.10/28.76)	DLESLKGLYRIMGNGFAG...cVHFHHTA
  405-  433 (35.59/19.47)	EVRVLMLLYSSKKKIFMGlipnDQSGFVN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27455 with Med25 domain of Kingdom Metazoa
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