<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27448

Description Mediator of RNA polymerase II transcription subunit 16
SequenceLPQGSPVRPGHSFLRDGASLGMLRELMVVIRIWGLLKPSCLPIYTATSDTQDSMSLLFRLLTKLWLCCKKEACQSLMVPIWQRPDSLPNTGRDENHPSEPDETLIDECCLLPSQLLIPNLDWLPVSDGIVNKLQGKQLLRLQFGKPPGLLGYPVTPQFDLFARGPGQPKIDHLRRLHLGAYPTEECKSCTRTKEFQARGRMWARGHMWGRESSCIRRCGCVTMLKSPNKTTAVKQWEQRWIKNCLCGGLWRRVP
Length254
PositionTail
OrganismOrnithorhynchus anatinus (Duckbill platypus)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.334
Instability index63.73
Isoelectric point9.34
Molecular weight28872.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27448
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.74|      29|      33|       2|      33|       1
---------------------------------------------------------------------------
    2-   33 (46.40/42.53)	PQGSPVRPGHSFLRDGASLgMLR...............ELMvvIRIW
   38-   81 (45.34/29.91)	PSCLPIYTATSDTQDSMSL.LFRlltklwlcckkeacqSLM..VPIW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.34|      28|      33|     137|     164|       2
---------------------------------------------------------------------------
  137-  164 (52.46/27.77)	QLLRLQFGKPPG..LLGYPVTPQFD....LFARG
  172-  205 (44.88/22.88)	HLRRLHLGAYPTeeCKSCTRTKEFQargrMWARG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27448 with Med16 domain of Kingdom Metazoa
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