<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27432

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSRHHVISKFNKFNNDIRETGRLPHASLPPRSCHGKAEECMGLCRALLGALHWLLCCTAASAQRVREGSEPGAAAAGEKQLAVCLQQLEKLLSSTKNRALLHVAKLEEAGSRSWTVIELAVYKVGDSLSGVVNAQLRAQAEECATLIRSIPAMLSMHSEQLHRTGFPTVHAVVLLEGTMNLTGEMQPLVEQLMMVKRMQRVPSPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYSQGEKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNLLLQECSKQGLLSEAHMTNLVAKRTADRELAPRLKSAESANIQPNPGLILRAEPTVTNILKTMDADHSKSPGGSAGVLXXXXXXXXX
Length447
PositionTail
OrganismOrnithorhynchus anatinus (Duckbill platypus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Monotremata> Ornithorhynchidae> Ornithorhynchus.
Aromaticity0.06
Grand average of hydropathy-0.097
Instability index50.58
Isoelectric point8.60
Molecular weight48572.06
Publications
PubMed=18464734

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27432
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.27|      25|      35|     122|     156|       1
---------------------------------------------------------------------------
  122-  146 (45.92/40.79)	LGALHWLLCCTAASA.QRVREGSEPG
  159-  184 (35.35/14.06)	LQQLEKLLSSTKNRAlLHVAKLEEAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.82|      13|     347|      48|      61|       4
---------------------------------------------------------------------------
   48-   61 (20.87/18.13)	EQAMIGPSPNpLIL
  398-  410 (24.95/15.51)	ESANIQPNPG.LIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.06|      19|      28|     299|     318|       5
---------------------------------------------------------------------------
  299-  318 (28.08/24.23)	TEELKwTAFTF.LKIPQVLVK
  330-  349 (29.98/18.93)	TEDVN.CAFEFlLKLTPLLDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27432 with Med24 domain of Kingdom Metazoa
Unable to open file!