<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27397

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCIQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTTASAERFREGLEMGATTGEKQLTMCLQRLNKLLSSTKNRALLHIAKLEEASSWTAIEQSLLKLGETFASLSNCHLQNQAEECGTLIRSIPIMLSMHSEQLHKTGFPTVHAVVLLEGTMNLTGEMQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQVLVKLKKYPQGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCINLLLQECSKQGLLSDVNTSNLMAKRTADREHAPWLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFISLNEFTKHINAENSKAASVRALLFDISFLMLCHVAQTYGSEVILSESSTVGEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWQEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLVGPLYSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPTTGMDTMPYWNLLPPKRPIKEVLTGIFAEVLEKGWVDSRSIHVFDTLLHMGGVYWFCNNLVKELLKETRKEYTLRAVELLYSIFCLDMQQVTLILLGHILPNLLTDSAKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEDDANVLSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGARTAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPKVVLAITDLSLPLGRRVAAKAIAAL
Length988
PositionTail
OrganismMonodelphis domestica (Gray short-tailed opossum)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Metatheria> Didelphimorphia> Didelphidae> Monodelphis.
Aromaticity0.07
Grand average of hydropathy0.035
Instability index46.54
Isoelectric point6.40
Molecular weight110508.62
Publications
PubMed=17495919

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27397
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     267.79|      81|     115|     615|     700|       1
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  615-  700 (130.96/90.85)	LAVCAVAWLVAHV..RMLGLDEREKSLQMirqlVGPLYSENTLQFYNERVVIMSSILEHMCADVlQQTATQIKFPTTGMDTMPYWNLL
  735-  817 (136.83/82.65)	LHMGGVYWFCNNLvkELLKETRKEYTLRA....VELLYSIFCLDMQQVTLILLGHILPNLLTDS.AKWHSLMDPPGTALAKLAVWCAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.43|      23|      24|      97|     120|       2
---------------------------------------------------------------------------
   97-  120 (40.47/29.31)	LLDIMDMFCDrLSCHGKAEECI..GL
  124-  146 (30.54/16.62)	LLSALHWL...LRCTTASAERFreGL
  346-  361 (31.41/17.30)	LLDKADQRCN...C.....DCI..NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.53|      24|      29|     289|     312|       3
---------------------------------------------------------------------------
  289-  312 (42.74/22.89)	FVGLIESPEGTEELK...WTAFTF.LKI
  316-  343 (33.79/16.79)	LVKLKKYPQGDKDFTedvNCAFEFlLKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27397 with Med24 domain of Kingdom Metazoa
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