<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27390

Description Transcription elongation factor A2
SequenceMPITLDLLQSTRIGMSVNALRKQSTDDEVISLAKSLIKSWKKLLGLDASEERNDEKKKNSYLPKSSSKDATDTKDQSAIKKQESPKTPTTPKITTFPPVPITCDAVRNKCREMLTAALQTDNDHIAIGTDCEHLSAQIEEYIYQDVKNTDMKYKNRVRSRISNLKDSKNPDLRKNVLCGAITPEQIAVMTSEEMASNELKEIRKAMTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
Length267
PositionUnknown
OrganismOrnithorhynchus anatinus (Duckbill platypus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Monotremata> Ornithorhynchidae> Ornithorhynchus.
Aromaticity0.04
Grand average of hydropathy-0.757
Instability index51.59
Isoelectric point8.89
Molecular weight30111.13
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27390
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.61|      11|      19|     144|     155|       1
---------------------------------------------------------------------------
  144-  155 (16.08/13.45)	QDVKNTDMKyKN
  165-  175 (20.53/11.32)	KDSKNPDLR.KN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.45|      14|      27|     224|     237|       2
---------------------------------------------------------------------------
  224-  237 (28.18/16.18)	TDLFTCGKC..KKKNC
  252-  267 (25.27/13.89)	TTFVVCNECgnRWKFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.98|      18|      19|      47|      64|       3
---------------------------------------------------------------------------
   47-   64 (29.79/15.53)	DASEERNDEKKKNSYLPK
   69-   86 (29.18/15.09)	DATDTKDQSAIKKQESPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.85|      26|      95|       2|      29|       4
---------------------------------------------------------------------------
    2-   29 (38.65/34.94)	PITLDLLQSTRIGMSVNALrkQSTDDEV
  100-  125 (47.20/35.20)	PITCDAVRNKCREMLTAAL..QTDNDHI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27390 with Med26 domain of Kingdom Metazoa
Unable to open file!