<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27376

Description Mediator of RNA polymerase II transcription subunit 9
SequenceLYSLGIAQNAPSTSVLTPPSVAPATHPSVAPATHPSVAPATHPSVAPATHPSVAPARARSSNHYTFLPLVHDIIKCMDKDSQDVYQELNELKSKFQAMRKLVGNMPGIDLSPEEQQRHLQSLREQVQTKNELLQKYKSLCMFEIPKE
Length147
PositionMiddle
OrganismXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.433
Instability index69.58
Isoelectric point8.00
Molecular weight16174.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27376
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      57.77|      14|      14|      23|      36|       1
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   11-   34 (24.43/12.07)	PStsvltppsvaPATHPSVAPATH
   35-   47 (16.98/ 6.49)	PS........vaPATHPSVAP...
   49-   58 (16.36/ 6.03)	..............THPSVAPARA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.46|      14|      22|      89|     102|       2
---------------------------------------------------------------------------
   89-  102 (22.39/15.47)	NELKSKFQAMRKLV
  113-  126 (23.07/16.12)	EEQQRHLQSLREQV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27376 with Med9 domain of Kingdom Metazoa
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