<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27328

Description Mediator complex subunit 28
SequenceRPPGRPGWFSQRPPGRPGSFSQSPPGRPGSFSQSPLIPSFPSPINPSATSGTYEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDVARQTECFFLQKRLHLSVQKPEQVIKEDVSELKNELQRKEALIQKHLGKLRQWQQVLEDINVQHDVPSEMPQGPLAYLEQASANIPAPMKQT
Length179
PositionHead
OrganismOrnithorhynchus anatinus (Duckbill platypus)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.684
Instability index71.95
Isoelectric point7.02
Molecular weight20021.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP27328
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.02|      16|      21|       2|      17|       1
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    2-   17 (40.11/17.16)	PPGRPGWFSQRP..PGRP
   24-   41 (32.91/13.02)	PPGRPGSFSQSPliPSFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.92|      16|      16|     106|     121|       2
---------------------------------------------------------------------------
  106-  121 (25.34/16.07)	QKPEQVIKEDVSELKN
  124-  139 (25.58/16.28)	QRKEALIQKHLGKLRQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP27328 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RPPGRPGWFSQRPPGRPGSFSQSPPGRPGSFSQSPLIPSFPSPI
1
44










Molecular Recognition Features






MoRF SequenceStartStop




NANANA