<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP27233
Description |
Mediator of RNA polymerase II transcription subunit 16 (Fragment) |
Sequence | SMDVGYVCEWDKRPRTSHCPSIPLVCAWSCRNLIAFTTDQRNEEEKDITNLIHILDTEHPWDVYSINSGHQEVITSLEWDQSGSRLLSADADGRIKCWGMTDHLANSWQSLVGSEVDGDPIVALSWLHNGVKLALHVEKSGVSSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPNGQVLTATESLCRLRCRVALADIAFTGGGNIVVATCDGSSTSPVQFYKVCVSVVSEKCKIDTEILPSLFMRCTTDPARKDKFPAVTHLKFLARDMSEQVLLCASNQCSSIAECWSLRKEGLPLNNIFQQLSPAVSDKQPMILKWRILSATNELERVSAVALPKLPISLTNTDIKVASETKFYPGLGLALAFHDGNVQIVHRLSLQPMAVLYGSSLRPSEEPSLKRQRSPTPCIHFKALQMSWTSLALVGLDTQGKLSMLRVSPSMGHSLDMSTSLRHLLFLLEYCMVTGYDWWDILLHVQPGMVHNLVEKLNEEYTRQNAALQQVLSTRILAMKASLCKLSQTTVTRVCDYHAKLFLISISCTLKSLLRPHVLNTPDKSPGDRLTEICNKFTDTDIDKVMINLKTEEFVLDMPTLQSLQQLIQWLGDFVLYLLASLPNQQGSSVRPGHSFLRDGASLGTLREMMVMIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTRLWLCCRDESHPCDPDESLIDECCLLPSQLLIPNMDWLPLGNGIISRLQSKLPLRLQFGKPPVAPSYASVQYEAYTRSPTQPKIDHLRRLHLGTFPTEPCKSCTRCGCVTMLKSPNKATAVKQWEQRWIKTCLCGGLWRKMPHTYS |
Length | 830 |
Position | Tail |
Organism | Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Amphibia>
Batrachia> Anura> Pipoidea> Pipidae> Xenopodinae> Xenopus> Silurana.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.063 |
Instability index | 50.01 |
Isoelectric point | 8.28 |
Molecular weight | 92754.67 |
Publications | PubMed=20431018
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP27233
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 220.39| 66| 96| 250| 317| 1
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250- 317 (115.12/85.04) LPSLFMRCT.TD..PARKDKFPAVTHLKFLARDMSEQVLLCASNQCSSIAECWSLRKEGLPlnNIFQQLSP
346- 414 (105.27/71.38) LPKLPISLTnTDikVASETKFYPGLGLALAFHDGNVQIVHRLSLQPMAVLYGSSLRPSEEP..SLKRQRSP
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